DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_RHDSA (50S ribosomal protein L3, chloroplastic OS=Rhodomonas salina GN=rpl3 PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47 Identity = 87/173 (50.29%), Postives = 126/173 (72.83%), Query Frame = -2 Query: 125 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 643 ++KT+ +D Y A+QIG+ V++ L KP LGHL+KS ++HL+E+R++SV+G E QK+ + F G V VSG TIGKGF G ++R++F RG MTHGSK+HR+ GSIG G+TPG+V+KGKKM GR+GG I+ L+IV ++ D ++++KGAVPGK GN+L + +I Sbjct: 37 QIKTQESDSYQAIQIGFSEVKESSLNKPLLGHLKKSQAPALKHLKEYRVKSVEGLEVAQKITLDS-FEVGKTVSVSGKTIGKGFAGTVRRYSFTRGPMTHGSKNHREPGSIGQGSTPGKVHKGKKMAGRLGGKQSTIKNLEIVHVNTDNNILVVKGAVPGKKGNILSIQQEEI 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMS (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain AS9601) GN=rplC PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47 Identity = 88/176 (50.00%), Postives = 125/176 (71.02%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 +LKT A DGY AVQIGYG ++K L+KPE GHL KSG ++HL+E+R++ +E G+++ + F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L ++KID+ ++++KG+VPGKPG+++ + P +VGK Sbjct: 37 QLKTTALDGYTAVQIGYGLSKEKHLSKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGKQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIINIKPNNVVGK 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMP (50S ribosomal protein L3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplC PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47 Identity = 88/175 (50.29%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LKT+ DGY A+QIGYG +DK L+KPE GHL KSG I ++HL+E+R++ +E G+++ F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L +VKID+ ++++KG+VPGKPG+++ + P +VG Sbjct: 37 QLKTQPLDGYTAIQIGYGVSKDKHLSKPEKGHLLKSGEILLKHLKEYRVEENSSYEIGKEITVTN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKKITTKGLLVVKIDDQKNLLVVKGSVPGKPGSIVNIKPNNVVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THETN (50S ribosomal protein L3 OS=Thermoanaerobacter tengcongensis GN=rplC PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.107e-46 Identity = 88/164 (53.66%), Postives = 122/164 (74.39%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT DGY+A+Q+G+G V +KKL KP LGH +K+G+ P R+L+EFRL + G+E G ++ + IF GD VDV+G + GKGF G IKR+ RRG M+HGSK HR++GS+GA T PGR +KGKKMPGRMG I+ L++VK+D +L ++++KG+VPG G+LL Sbjct: 39 KTVEKDGYNAIQVGFGDVSEKKLNKPLLGHFKKAGVSPKRYLREFRLDDISGYEVGTEIKVD-IFKPGDRVDVTGISKGKGFAGVIKRYGARRGPMSHGSKYHRRVGSMGATTDPGRTFKGKKMPGRMGSDRVTIQNLEVVKVDPELNLLVVKGSVPGPKGSLL 201
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM9 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplC PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46 Identity = 88/176 (50.00%), Postives = 122/176 (69.32%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 +LKT DGY AVQIGYG +DK + KPE GHL KSG ++HL+E+R++ +E G ++ + F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L ++KID+ +++IKG+VPGKPG+++ + P +VGK Sbjct: 37 QLKTTTLDGYSAVQIGYGLSKDKHINKPEKGHLLKSGEELLKHLKEYRVEETTSYEIGNQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVIKGSVPGKPGSIVNIKPNNVVGK 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM2 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplC PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46 Identity = 86/176 (48.86%), Postives = 124/176 (70.45%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 +LKT A DGY A+QIGYG ++K ++KPE GHL KSG ++HL+E+R++ +E G ++ + F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L ++KID+ ++++KG+VPGKPG+++ + P +VGK Sbjct: 37 QLKTNALDGYTAIQIGYGVSKEKHISKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGNQITVKN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIVNIKPNNVVGK 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM5 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplC PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 4.205e-46 Identity = 87/175 (49.71%), Postives = 123/175 (70.29%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LKT++ DGY A+QIGYG +DK L+KPE GHL KSG ++HL+EF+++ +E G+++ F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L +VKID+ ++++KG+VPGKPG+++ + P VG Sbjct: 37 QLKTQSLDGYTAIQIGYGVSKDKHLSKPEKGHLLKSGKELLKHLKEFKVEENSSYEIGKEITVTN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKKITTKGLLVVKIDDQKNLLVVKGSVPGKPGSIVNIRPNNTVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_GUITH (50S ribosomal protein L3, chloroplastic OS=Guillardia theta GN=rpl3 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46 Identity = 88/167 (52.69%), Postives = 120/167 (71.86%), Query Frame = -2 Query: 140 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 640 LK++ D Y+A+QIGY +V KKLTKP+LGHLQ + L P++HL+E+++ + F Q+L IF G +V VSG +IGKGF G +KRHNF RG MTHGSK+HR+ GSIG G+TP +V+KGKKM GR+GG + L +V +D D V+++KG VPGK GN+L + Sbjct: 38 LKSDTKDNYNAIQIGYQQVDAKKLTKPQLGHLQVNNLPPLKHLKEYKVDATHTFTIAQQLDVS-IFELGQIVSVSGVSIGKGFAGTVKRHNFTRGPMTHGSKNHREPGSIGQGSTPAKVHKGKKMAGRLGGHQVTTKNLTVVHLDKDNNVLVLKGCVPGKRGNILSI 203
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PORYE (50S ribosomal protein L3, chloroplastic OS=Porphyra yezoensis GN=rpl3 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45 Identity = 85/169 (50.30%), Postives = 127/169 (75.15%), Query Frame = -2 Query: 137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643 ++K +TDGY+A+Q+GY +V ++KL KP LGHL+KS P+++L+E+ ++S D FE Q L+ ++F G ++VS ++GKGF G KRH+F RG M+HGSK+HRQ GSIGAGTTPGRVY GK M G++G I+ L+IV I+++ ++++KGAVPGKPG L++++ Sbjct: 37 QIKAVSTDGYNAIQVGYKQVAEQKLNKPLLGHLKKSQAPPLKYLREYEMKSTDDFEVSQILS-TDLFQVGQKINVSSRSVGKGFSGYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQLGNKKVTIKNLQIVSINSENDLLIVKGAVPGKPGALVKIS 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44 Identity = 83/164 (50.61%), Postives = 121/164 (73.78%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT TDGY+A+Q+G+G V++K+LTKP +GH +K+G+ R+L+EFRL + G+E G ++ + IF GD VDV+G + GKGF G +KR+ RG M+HGSK HR++GS+GA T PGR +KGK MPG MG I+ L++VK+D +L ++++KG+VPG G+LL Sbjct: 39 KTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMGATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |