DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOBB (50S ribosomal protein L3 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplC PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33 Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 K+ A DGY A+Q+G+G + ++GH + +G H +E R+ + D ++ G + +F EGDLVDV+GT+IGKGF G IKR F+ G +HGS+ HR GSIG TP RV+K KKMPG++G +++LK+V++D ++++ GA+PG ++ + Sbjct: 39 KSVAKDGYSAIQVGFGAKDASRANAAQVGHCKGAGAGVFTHYRELRMDNTDAYKLGDVIE-AAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHGSRFHRAPGSIGCSATPSRVFKNKKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLI 203
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLFA (50S ribosomal protein L3 OS=Xylella fastidiosa GN=rplC PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33 Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = -2 Query: 155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643 ++KT DGYDAVQ+ G R + KPE GH K+ + R L EFR++ + G ++ IF G VD+ G T GKGFQG IKRHNFR G THG S SHR GS+G TPGRV+ GKKM G MG + ++ L++VKID + ++ ++GA+PG G Sbjct: 40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVRQSVQNLEVVKIDVERCLIAVRGAIPGASG 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PSEU5 (50S ribosomal protein L3 OS=Pseudomonas stutzeri (strain A1501) GN=rplC PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33 Identity = 80/172 (46.51%), Postives = 108/172 (62.79%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 + K E +DGY AVQ+ G R ++TK + GH K+ + R + EFRL+ + F+ G ++ EIF G LVDV+G + GKGF G IKR NFR THG S SHR GSIG TPGRV+KGKKM G MG ++ L+IV++D + ++++KGAVPG G + V PA Sbjct: 37 QFKNEESDGYRAVQVTVGERRASRVTKAQAGHFAKANVAAGRGVWEFRLEGEE-FQVGDQIN-AEIFQAGQLVDVTGQSKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEIVRVDAERNLLLVKGAVPGATGGDVFVRPA 206
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PSEMY (50S ribosomal protein L3 OS=Pseudomonas mendocina (strain ymp) GN=rplC PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33 Identity = 80/172 (46.51%), Postives = 108/172 (62.79%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 + K E +DGY AVQ+ G R +++K + GH K+ + R + EFRL+ D ++AG L EIF G LVDV+G + GKGF G IKR NFR THG S SHR GSIG TPGRV+KGKKM G MG ++ L++V++D + ++++KGAVPG G + V PA Sbjct: 37 QFKNEESDGYRAVQVTVGERRASRVSKAQAGHFAKANVAAGRTVMEFRLEEGD-YQAGD-LINAEIFQAGQLVDVTGQSKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEVVRVDAERNLLLVKGAVPGATGGDVIVRPA 206
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BORBZ (50S ribosomal protein L3 OS=Borrelia burgdorferi (strain ZS7) GN=rplC PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33 Identity = 75/171 (43.86%), Postives = 107/171 (62.57%), Query Frame = -2 Query: 128 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQK-SGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 637 KT DGY A+ G ++ K++KP G + + P R++ E L+ +DG++AG ++ + +F VDV+GTT GKGFQG +KRHNF G +HGSK HR LG G TTP R +KG KM GRMGG + I+ L++V ID + R +++KGAVPG G+ + V +K Sbjct: 38 KTVDRDGYSALIAGSVDLKSSKVSKPIKGQYKSLKDIEPKRYVIE--LKGLDGYDAGDEIKVD-VFKSVKYVDVTGTTKGKGFQGAMKRHNFSGGPSSHGSKFHRHLGGTGQATTPARTFKGTKMAGRMGGNQQTIQNLEVVLIDEEKRALLVKGAVPGAKGSFVVVKKSK 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLFT (50S ribosomal protein L3 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rplC PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33 Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = -2 Query: 155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643 ++KT DGYDAVQ+ G R + KPE GH K+ + R L EFR++ + G ++ IF G VD+ G T GKGFQG IKRHNFR G THG S SHR GS+G TPGRV+ GKKM G MG + ++ L+++KID + ++ ++GA+PG G Sbjct: 40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVKQSVQNLEVIKIDVERCLIAVRGAIPGASG 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLF2 (50S ribosomal protein L3 OS=Xylella fastidiosa (strain M23) GN=rplC PE=3 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33 Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = -2 Query: 155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643 ++KT DGYDAVQ+ G R + KPE GH K+ + R L EFR++ + G ++ IF G VD+ G T GKGFQG IKRHNFR G THG S SHR GS+G TPGRV+ GKKM G MG + ++ L+++KID + ++ ++GA+PG G Sbjct: 40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVKQSVQNLEVIKIDVERCLIAVRGAIPGASG 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_VARPS (50S ribosomal protein L3 OS=Variovorax paradoxus (strain S110) GN=rplC PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33 Identity = 71/174 (40.80%), Postives = 109/174 (62.64%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++K++ TDGY A+Q+ +G + ++TKP+ GHL K+G+ ++EFR+ + +AG +A +F+ G VDV GT+IGKG+ G IKRHN +HG S+SH GSIG PGRV+ GK+M G +G T+ + L + +ID ++++IKGA+PG G + V PA Sbjct: 41 QIKSQETDGYVALQVTFGSRKASRVTKPQAGHLAKAGVEAGEIIREFRVTADTAGQHKAGAVIAASSVFSVGQKVDVQGTSIGKGYAGTIKRHNMSSQRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTKTTQNLDVFRIDEARQLLLIKGAIPGSKGGFVTVRPA 214
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SHEPW (50S ribosomal protein L3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplC PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33 Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT TDGY A+Q+ G + ++TKPE GH K+G+ R L E RL DG E G +L + IF + VDV+G + GKGFQGGIKR NF MTHG S +HR GSIG TPGRV+KGKKM G MG + L IV++D + ++++KGAVPG L + PA Sbjct: 37 QVKTLDTDGYRALQVTTGTKKANRITKPEAGHFAKAGVEAGRGLWELRLADGDGEGIEVGAELNVD-IFADIAKVDVTGQSKGKGFQGGIKRWNFHAQDMTHGNSLAHRSNGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDIVRVDAERNLLLVKGAVPGATNGDLIIKPA 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SALAR (50S ribosomal protein L3 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplC PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33 Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++K A DGY AVQ+ G + ++TKPE GH K+G+ R L EFRL + + GQ ++ E +F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG TPG+V+KGKKM G+MG ++ L +V++D + ++++KG VPG G L V PA Sbjct: 36 QVKDLANDGYRAVQVTTGVKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVE-LFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPA 206 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |