DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOBB (50S ribosomal protein L3 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.833e-33
Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637
            K+ A DGY A+Q+G+G     +    ++GH + +G     H +E R+ + D ++ G  +    +F EGDLVDV+GT+IGKGF G IKR  F+ G  +HGS+ HR  GSIG   TP RV+K KKMPG++G     +++LK+V++D    ++++ GA+PG    ++ +
Sbjct:   39 KSVAKDGYSAIQVGFGAKDASRANAAQVGHCKGAGAGVFTHYRELRMDNTDAYKLGDVIE-AAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHGSRFHRAPGSIGCSATPSRVFKNKKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLI 203          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLFA (50S ribosomal protein L3 OS=Xylella fastidiosa GN=rplC PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643
            ++KT   DGYDAVQ+  G  R   + KPE GH  K+ +   R L EFR++      +  G ++    IF  G  VD+ G T GKGFQG IKRHNFR G  THG S SHR  GS+G   TPGRV+ GKKM G MG   + ++ L++VKID +  ++ ++GA+PG  G
Sbjct:   40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVRQSVQNLEVVKIDVERCLIAVRGAIPGASG 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PSEU5 (50S ribosomal protein L3 OS=Pseudomonas stutzeri (strain A1501) GN=rplC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 80/172 (46.51%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            + K E +DGY AVQ+  G  R  ++TK + GH  K+ +   R + EFRL+  + F+ G ++   EIF  G LVDV+G + GKGF G IKR NFR    THG S SHR  GSIG   TPGRV+KGKKM G MG     ++ L+IV++D +  ++++KGAVPG  G  + V PA
Sbjct:   37 QFKNEESDGYRAVQVTVGERRASRVTKAQAGHFAKANVAAGRGVWEFRLEGEE-FQVGDQIN-AEIFQAGQLVDVTGQSKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEIVRVDAERNLLLVKGAVPGATGGDVFVRPA 206          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PSEMY (50S ribosomal protein L3 OS=Pseudomonas mendocina (strain ymp) GN=rplC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 80/172 (46.51%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            + K E +DGY AVQ+  G  R  +++K + GH  K+ +   R + EFRL+  D ++AG  L   EIF  G LVDV+G + GKGF G IKR NFR    THG S SHR  GSIG   TPGRV+KGKKM G MG     ++ L++V++D +  ++++KGAVPG  G  + V PA
Sbjct:   37 QFKNEESDGYRAVQVTVGERRASRVSKAQAGHFAKANVAAGRTVMEFRLEEGD-YQAGD-LINAEIFQAGQLVDVTGQSKGKGFAGTIKRWNFRGQDNTHGNSVSHRVPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEVVRVDAERNLLLVKGAVPGATGGDVIVRPA 206          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BORBZ (50S ribosomal protein L3 OS=Borrelia burgdorferi (strain ZS7) GN=rplC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.393e-33
Identity = 75/171 (43.86%), Postives = 107/171 (62.57%), Query Frame = -2
Query:  128 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQK-SGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 637
            KT   DGY A+  G   ++  K++KP  G  +    + P R++ E  L+ +DG++AG ++  + +F     VDV+GTT GKGFQG +KRHNF  G  +HGSK HR LG  G  TTP R +KG KM GRMGG  + I+ L++V ID + R +++KGAVPG  G+ + V  +K
Sbjct:   38 KTVDRDGYSALIAGSVDLKSSKVSKPIKGQYKSLKDIEPKRYVIE--LKGLDGYDAGDEIKVD-VFKSVKYVDVTGTTKGKGFQGAMKRHNFSGGPSSHGSKFHRHLGGTGQATTPARTFKGTKMAGRMGGNQQTIQNLEVVLIDEEKRALLVKGAVPGAKGSFVVVKKSK 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLFT (50S ribosomal protein L3 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643
            ++KT   DGYDAVQ+  G  R   + KPE GH  K+ +   R L EFR++      +  G ++    IF  G  VD+ G T GKGFQG IKRHNFR G  THG S SHR  GS+G   TPGRV+ GKKM G MG   + ++ L+++KID +  ++ ++GA+PG  G
Sbjct:   40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVKQSVQNLEVIKIDVERCLIAVRGAIPGASG 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_XYLF2 (50S ribosomal protein L3 OS=Xylella fastidiosa (strain M23) GN=rplC PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  155 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVD--GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPG 643
            ++KT   DGYDAVQ+  G  R   + KPE GH  K+ +   R L EFR++      +  G ++    IF  G  VD+ G T GKGFQG IKRHNFR G  THG S SHR  GS+G   TPGRV+ GKKM G MG   + ++ L+++KID +  ++ ++GA+PG  G
Sbjct:   40 QIKTSDVDGYDAVQVTVGSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGLS-IFAVGQKVDIQGITKGKGFQGTIKRHNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAVKQSVQNLEVIKIDVERCLIAVRGAIPGASG 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_VARPS (50S ribosomal protein L3 OS=Variovorax paradoxus (strain S110) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 71/174 (40.80%), Postives = 109/174 (62.64%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL--QSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++K++ TDGY A+Q+ +G  +  ++TKP+ GHL K+G+     ++EFR+   +    +AG  +A   +F+ G  VDV GT+IGKG+ G IKRHN      +HG S+SH   GSIG    PGRV+ GK+M G +G  T+  + L + +ID   ++++IKGA+PG  G  + V PA
Sbjct:   41 QIKSQETDGYVALQVTFGSRKASRVTKPQAGHLAKAGVEAGEIIREFRVTADTAGQHKAGAVIAASSVFSVGQKVDVQGTSIGKGYAGTIKRHNMSSQRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTKTTQNLDVFRIDEARQLLLIKGAIPGSKGGFVTVRPA 214          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SHEPW (50S ribosomal protein L3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT  TDGY A+Q+  G  +  ++TKPE GH  K+G+   R L E RL   DG   E G +L  + IF +   VDV+G + GKGFQGGIKR NF    MTHG S +HR  GSIG   TPGRV+KGKKM G MG      + L IV++D +  ++++KGAVPG     L + PA
Sbjct:   37 QVKTLDTDGYRALQVTTGTKKANRITKPEAGHFAKAGVEAGRGLWELRLADGDGEGIEVGAELNVD-IFADIAKVDVTGQSKGKGFQGGIKRWNFHAQDMTHGNSLAHRSNGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDIVRVDAERNLLLVKGAVPGATNGDLIIKPA 209          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SALAR (50S ribosomal protein L3 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.126e-33
Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++K  A DGY AVQ+  G  +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++ E +F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   TPG+V+KGKKM G+MG     ++ L +V++D +  ++++KG VPG  G  L V PA
Sbjct:   36 QVKDLANDGYRAVQVTTGVKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVE-LFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPA 206          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_GEOBB1.833e-3339.7650S ribosomal protein L3 OS=Geobacter bemidjiensis... [more]
RL3_XYLFA2.393e-3345.7850S ribosomal protein L3 OS=Xylella fastidiosa GN=... [more]
RL3_PSEU52.393e-3346.5150S ribosomal protein L3 OS=Pseudomonas stutzeri (... [more]
RL3_PSEMY2.393e-3346.5150S ribosomal protein L3 OS=Pseudomonas mendocina ... [more]
RL3_BORBZ2.393e-3343.8650S ribosomal protein L3 OS=Borrelia burgdorferi (... [more]
RL3_XYLFT3.126e-3345.1850S ribosomal protein L3 OS=Xylella fastidiosa (st... [more]
RL3_XYLF23.126e-3345.1850S ribosomal protein L3 OS=Xylella fastidiosa (st... [more]
RL3_VARPS3.126e-3340.8050S ribosomal protein L3 OS=Variovorax paradoxus (... [more]
RL3_SHEPW3.126e-3347.1350S ribosomal protein L3 OS=Shewanella piezotolera... [more]
RL3_SALAR3.126e-3345.3550S ribosomal protein L3 OS=Salmonella arizonae (s... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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