DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DINSH (50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 78/180 (43.33%), Postives = 106/180 (58.89%), Query Frame = -2
Query:  101 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 637
            +T   DGY AVQ+G G  + K+ TK   GH   + + P R + EFR+   +    G+++  +  F EG  VDVSGT+IGKGF G +KRHNF     +HG S SHR  GS G    PG+V+KGKKM G MG      + L++V+ D D  ++MIKGAVPG  G  + +  A  V K +P+N
Sbjct:   39 RTAEKDGYSAVQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYF-EGQYVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDADRGLIMIKGAVPGSKGGWVTIKDA--VKKPVPEN 215          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALHEH (50S ribosomal protein L3 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33
Identity = 74/176 (42.05%), Postives = 114/176 (64.77%), Query Frame = -2
Query:  128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL---QSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643
            +++T   DGY  VQ+  G  R  +++KP  GH   +G+   R + EFR+   Q+++  EAG++L  E  F  G +VD++GT+ GKGF G +KRHNFR    THG S +HR  GSIG   TPGRV+KGKKM G+MG     ++ L++V++D +  +++++G+VPG  G+ + V PA+
Sbjct:   37 QVRTPERDGYSGVQVTAGSRRPNRVSKPMAGHFAAAGVDAGRGVWEFRVSDGQAIE-LEAGKELTVET-FEAGQVVDITGTSKGKGFAGTVKRHNFRTQDATHGNSLAHRAPGSIGQNQTPGRVFKGKKMAGQMGNKRSTVKNLEVVRVDAERHLLLVRGSVPGAVGSDVIVRPAR 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_STRGG (50S ribosomal protein L3 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T  +DGY+AVQI +G +  +K+ KP  GH  K+ + P RHL E R      +  GQ++   E+F  G  VDV+G + GKGF G +KRHNF+     HG+ + HR  GSIG   TPGRV+KG +M GRMG      + L I  +D +  +++IKGAVPG  G L+ V  A
Sbjct:   40 QVRTNDSDGYEAVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVELRTPDASEYTLGQEVT-AEVFESGVKVDVTGKSKGKGFAGVMKRHNFKGLGAGHGTQRKHRSPGSIGGCATPGRVFKGMRMAGRMGNERVTTQNLTIHAVDAEKGLLLIKGAVPGPNGGLVLVRTA 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SHELP (50S ribosomal protein L3 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 81/174 (46.55%), Postives = 107/174 (61.49%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT  TDGY A+QI  G  +  ++TKPE GH  K+G+   R L E RL   +G   E G +L  + IF +   VDV+G + GKGFQGGIKR NFR    THG S +HR  GSIG   TPGRV+KGKKM G MG      + L +V++D +  ++++KGAVPG     L + PA
Sbjct:   37 QVKTLETDGYRALQITTGTKKANRITKPEAGHFAKAGVEAGRGLWEMRLADGEGEGIEVGAELNVD-IFADVAKVDVTGQSKGKGFQGGIKRWNFRTQDATHGNSLAHRANGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDVVRVDAERNLLLVKGAVPGATNGDLIIKPA 209          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LARHH (50S ribosomal protein L3 OS=Laribacter hongkongensis (strain HLHK9) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFE--AGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            ++KT  TDGY+AVQ+ YG  +  ++ K E GH  K+G+   R L+EF   +    E   G  L  E +F  G LVDV+GT+ GKGF G IKRHNF     +HG S + R  GSIG    PGRV+ GK+M G+ G   R ++ L++V+ID + ++++IKG+VPG  GN + V PA   G
Sbjct:   37 QIKTADTDGYNAVQVAYGSKKANRVLKAEAGHFAKAGVEAGRGLKEFTADAAKLAELKVGDTLTVE-LFQVGQLVDVTGTSQGKGFSGVIKRHNFSSNRASHGNSVTTRAPGSIGQAQDPGRVFPGKRMAGQYGNVKRTVQSLEVVRIDAERQLLLIKGSVPGSKGNDVVVLPAVKAG 213          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_HYDS0 (50S ribosomal protein L3 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 65/172 (37.79%), Postives = 110/172 (63.95%), Query Frame = -2
Query:  125 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 640
            +K+  TDGY+A+Q+G   ++  +  KP +GH +K+ L P+++L+EFR+  V  F  GQ+L  + IF+ G+LVD+ G + G+GF G +KR +F     +HG + HR +GS+G  T PGRV+K K+M GR G  T +++ L +V +  D  ++++ G+VPG    ++ +  + I
Sbjct:   37 IKSSETDGYNAIQVGSIPLKQSRFKKPMVGHFKKANLTPLKYLKEFRVDDVSSFALGQELGVD-IFSPGELVDIVGRSKGRGFTGTMKRWDFGGFPKSHGHRYHRAVGSVGNRTDPGRVWKSKRMAGRHGNETIRVQALVVVDVLKDKGIILVNGSVPGHKDGIVYIEKSHI 207          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOSF (50S ribosomal protein L3 OS=Geobacter sp. (strain FRC-32) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT+  DGY+A+Q+G+      K     +GH + +G       +E R+ +VD +  G  L   ++F  GD++DV+GT+IGKGFQG IKR  F+ G  +HGS+ HR  GSIG   TP RV+K KKMPG++G     +++LK+V++D    ++++ GA+PG    L+
Sbjct:   39 KTKEKDGYNAIQVGFDAKEAAKANSATVGHCKAAGSGAFSFFRELRVDNVDSYNVGDVLN-ADLFAAGDVIDVTGTSIGKGFQGVIKRWGFKGGRSSHGSRFHRAPGSIGCSATPSRVFKNKKMPGQLGNERVTVQRLKVVRVDAADNLILVGGAIPGSTNGLV 201          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_EUBR3 (50S ribosomal protein L3 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKL----------------TKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT   DGY AVQ+G+G  ++K +                 K ++GH +K+G+   R ++EF+ ++ D +    ++   +IF EGD VDV+  + GKGFQG IKR    RG M HGSK HR  GS GA ++P +V+KGK MPG MG      + L++V++D D  +++IKGAVPG    L+ V      GK
Sbjct:   37 QIKTVENDGYSAVQVGFGDKKEKVVEKDANGKKSVAHRHGVNKAQMGHFKKAGVSGKRFVREFKFENADEYNLADEIK-ADIFAEGDKVDVTAISKGKGFQGAIKRLGQHRGPMAHGSKFHRHQGSNGACSSPSKVFKGKGMPGHMGSVKVTTQNLEVVRVDADKNLLLIKGAVPGAKKALITVKETTKSGK 227          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TROWT (50S ribosomal protein L3 OS=Tropheryma whipplei (strain Twist) GN=rplC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = -2
Query:  152 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGN 643
            ++K    DGY  +QI  G +  +++ +P  GH  K+GL P R ++E   +   G E G      EIF EG LVDV G + GKGF G +KRHNF+  + THGS ++HR+ GS+GA +TP RV+KG +M GR+G +   +  L++VKID++  +++++GAVPG  G+
Sbjct:   36 QVKAPEKDGYSRLQIATGAIDPRRVNRPRKGHFAKAGLTPRRFIREVDSEGSLGDEFGP-----EIFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGTRMAGRLGSSRVTVHNLRLVKIDSENGLLLVEGAVPGSSGS 195          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TROW8 (50S ribosomal protein L3 OS=Tropheryma whipplei (strain TW08/27) GN=rplC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = -2
Query:  152 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGN 643
            ++K    DGY  +QI  G +  +++ +P  GH  K+GL P R ++E   +   G E G      EIF EG LVDV G + GKGF G +KRHNF+  + THGS ++HR+ GS+GA +TP RV+KG +M GR+G +   +  L++VKID++  +++++GAVPG  G+
Sbjct:   36 QVKAPEKDGYSRLQIATGAIDPRRVNRPRKGHFAKAGLTPRRFIREVDSEGSLGDEFGP-----EIFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGTRMAGRLGSSRVTVHNLRLVKIDSENGLLLVEGAVPGSSGS 195          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_DINSH6.964e-3343.3350S ribosomal protein L3 OS=Dinoroseobacter shibae... [more]
RL3_ALHEH6.964e-3342.0550S ribosomal protein L3 OS=Alkalilimnicola ehrlic... [more]
RL3_STRGG9.095e-3343.0250S ribosomal protein L3 OS=Streptomyces griseus s... [more]
RL3_SHELP9.095e-3346.5550S ribosomal protein L3 OS=Shewanella loihica (st... [more]
RL3_LARHH9.095e-3343.8250S ribosomal protein L3 OS=Laribacter hongkongens... [more]
RL3_HYDS09.095e-3337.7950S ribosomal protein L3 OS=Hydrogenobaculum sp. (... [more]
RL3_GEOSF9.095e-3340.2450S ribosomal protein L3 OS=Geobacter sp. (strain ... [more]
RL3_EUBR39.095e-3339.0650S ribosomal protein L3 OS=Eubacterium rectale (s... [more]
RL3_TROWT1.188e-3242.4250S ribosomal protein L3 OS=Tropheryma whipplei (s... [more]
RL3_TROW81.188e-3242.4250S ribosomal protein L3 OS=Tropheryma whipplei (s... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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