DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DINSH (50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplC PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33 Identity = 78/180 (43.33%), Postives = 106/180 (58.89%), Query Frame = -2 Query: 101 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 637 +T DGY AVQ+G G + K+ TK GH + + P R + EFR+ + G+++ + F EG VDVSGT+IGKGF G +KRHNF +HG S SHR GS G PG+V+KGKKM G MG + L++V+ D D ++MIKGAVPG G + + A V K +P+N Sbjct: 39 RTAEKDGYSAVQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYF-EGQYVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDADRGLIMIKGAVPGSKGGWVTIKDA--VKKPVPEN 215
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALHEH (50S ribosomal protein L3 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplC PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.964e-33 Identity = 74/176 (42.05%), Postives = 114/176 (64.77%), Query Frame = -2 Query: 128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL---QSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643 +++T DGY VQ+ G R +++KP GH +G+ R + EFR+ Q+++ EAG++L E F G +VD++GT+ GKGF G +KRHNFR THG S +HR GSIG TPGRV+KGKKM G+MG ++ L++V++D + +++++G+VPG G+ + V PA+ Sbjct: 37 QVRTPERDGYSGVQVTAGSRRPNRVSKPMAGHFAAAGVDAGRGVWEFRVSDGQAIE-LEAGKELTVET-FEAGQVVDITGTSKGKGFAGTVKRHNFRTQDATHGNSLAHRAPGSIGQNQTPGRVFKGKKMAGQMGNKRSTVKNLEVVRVDAERHLLLVRGSVPGAVGSDVIVRPAR 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_STRGG (50S ribosomal protein L3 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T +DGY+AVQI +G + +K+ KP GH K+ + P RHL E R + GQ++ E+F G VDV+G + GKGF G +KRHNF+ HG+ + HR GSIG TPGRV+KG +M GRMG + L I +D + +++IKGAVPG G L+ V A Sbjct: 40 QVRTNDSDGYEAVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVELRTPDASEYTLGQEVT-AEVFESGVKVDVTGKSKGKGFAGVMKRHNFKGLGAGHGTQRKHRSPGSIGGCATPGRVFKGMRMAGRMGNERVTTQNLTIHAVDAEKGLLLIKGAVPGPNGGLVLVRTA 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SHELP (50S ribosomal protein L3 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 81/174 (46.55%), Postives = 107/174 (61.49%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT TDGY A+QI G + ++TKPE GH K+G+ R L E RL +G E G +L + IF + VDV+G + GKGFQGGIKR NFR THG S +HR GSIG TPGRV+KGKKM G MG + L +V++D + ++++KGAVPG L + PA Sbjct: 37 QVKTLETDGYRALQITTGTKKANRITKPEAGHFAKAGVEAGRGLWEMRLADGEGEGIEVGAELNVD-IFADVAKVDVTGQSKGKGFQGGIKRWNFRTQDATHGNSLAHRANGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDVVRVDAERNLLLVKGAVPGATNGDLIIKPA 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LARHH (50S ribosomal protein L3 OS=Laribacter hongkongensis (strain HLHK9) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFE--AGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 ++KT TDGY+AVQ+ YG + ++ K E GH K+G+ R L+EF + E G L E +F G LVDV+GT+ GKGF G IKRHNF +HG S + R GSIG PGRV+ GK+M G+ G R ++ L++V+ID + ++++IKG+VPG GN + V PA G Sbjct: 37 QIKTADTDGYNAVQVAYGSKKANRVLKAEAGHFAKAGVEAGRGLKEFTADAAKLAELKVGDTLTVE-LFQVGQLVDVTGTSQGKGFSGVIKRHNFSSNRASHGNSVTTRAPGSIGQAQDPGRVFPGKRMAGQYGNVKRTVQSLEVVRIDAERQLLLIKGSVPGSKGNDVVVLPAVKAG 213
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_HYDS0 (50S ribosomal protein L3 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 65/172 (37.79%), Postives = 110/172 (63.95%), Query Frame = -2 Query: 125 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 640 +K+ TDGY+A+Q+G ++ + KP +GH +K+ L P+++L+EFR+ V F GQ+L + IF+ G+LVD+ G + G+GF G +KR +F +HG + HR +GS+G T PGRV+K K+M GR G T +++ L +V + D ++++ G+VPG ++ + + I Sbjct: 37 IKSSETDGYNAIQVGSIPLKQSRFKKPMVGHFKKANLTPLKYLKEFRVDDVSSFALGQELGVD-IFSPGELVDIVGRSKGRGFTGTMKRWDFGGFPKSHGHRYHRAVGSVGNRTDPGRVWKSKRMAGRHGNETIRVQALVVVDVLKDKGIILVNGSVPGHKDGIVYIEKSHI 207
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOSF (50S ribosomal protein L3 OS=Geobacter sp. (strain FRC-32) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT+ DGY+A+Q+G+ K +GH + +G +E R+ +VD + G L ++F GD++DV+GT+IGKGFQG IKR F+ G +HGS+ HR GSIG TP RV+K KKMPG++G +++LK+V++D ++++ GA+PG L+ Sbjct: 39 KTKEKDGYNAIQVGFDAKEAAKANSATVGHCKAAGSGAFSFFRELRVDNVDSYNVGDVLN-ADLFAAGDVIDVTGTSIGKGFQGVIKRWGFKGGRSSHGSRFHRAPGSIGCSATPSRVFKNKKMPGQLGNERVTVQRLKVVRVDAADNLILVGGAIPGSTNGLV 201
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_EUBR3 (50S ribosomal protein L3 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33 Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKL----------------TKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT DGY AVQ+G+G ++K + K ++GH +K+G+ R ++EF+ ++ D + ++ +IF EGD VDV+ + GKGFQG IKR RG M HGSK HR GS GA ++P +V+KGK MPG MG + L++V++D D +++IKGAVPG L+ V GK Sbjct: 37 QIKTVENDGYSAVQVGFGDKKEKVVEKDANGKKSVAHRHGVNKAQMGHFKKAGVSGKRFVREFKFENADEYNLADEIK-ADIFAEGDKVDVTAISKGKGFQGAIKRLGQHRGPMAHGSKFHRHQGSNGACSSPSKVFKGKGMPGHMGSVKVTTQNLEVVRVDADKNLLLIKGAVPGAKKALITVKETTKSGK 227
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TROWT (50S ribosomal protein L3 OS=Tropheryma whipplei (strain Twist) GN=rplC PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32 Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = -2 Query: 152 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGN 643 ++K DGY +QI G + +++ +P GH K+GL P R ++E + G E G EIF EG LVDV G + GKGF G +KRHNF+ + THGS ++HR+ GS+GA +TP RV+KG +M GR+G + + L++VKID++ +++++GAVPG G+ Sbjct: 36 QVKAPEKDGYSRLQIATGAIDPRRVNRPRKGHFAKAGLTPRRFIREVDSEGSLGDEFGP-----EIFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGTRMAGRLGSSRVTVHNLRLVKIDSENGLLLVEGAVPGSSGS 195
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TROW8 (50S ribosomal protein L3 OS=Tropheryma whipplei (strain TW08/27) GN=rplC PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32 Identity = 70/165 (42.42%), Postives = 106/165 (64.24%), Query Frame = -2 Query: 152 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGN 643 ++K DGY +QI G + +++ +P GH K+GL P R ++E + G E G EIF EG LVDV G + GKGF G +KRHNF+ + THGS ++HR+ GS+GA +TP RV+KG +M GR+G + + L++VKID++ +++++GAVPG G+ Sbjct: 36 QVKAPEKDGYSRLQIATGAIDPRRVNRPRKGHFAKAGLTPRRFIREVDSEGSLGDEFGP-----EIFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGTRMAGRLGSSRVTVHNLRLVKIDSENGLLLVEGAVPGSSGS 195 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |