DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALKOO (50S ribosomal protein L3 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44
Identity = 86/176 (48.86%), Postives = 121/176 (68.75%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT   DGY+A+Q+GYG++ ++ + KP  GH  K+G+ P R LQEFRL+S +GF AGQ+L   ++F  GD VD+SG + GKGFQG IKRHN  RG M HGS+ HR  GS+GA + P RV+KGKK+ G MG     I+ L++VK+D +  ++++KGAVPG    LL +  +   GK
Sbjct:   36 QVKTIEKDGYNAIQVGYGQINERNVNKPSKGHFDKAGVTPKRSLQEFRLESTEGFTAGQELK-ADLFKAGDKVDISGVSKGKGFQGVIKRHNQSRGPMAHGSRYHRGPGSMGAASYPSRVFKGKKLAGHMGHENVTIQNLEVVKVDVERNLLIVKGAVPGPKKGLLTINTSIKQGK 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PORPU (50S ribosomal protein L3, chloroplastic OS=Porphyra purpurea GN=rpl3 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.769e-44
Identity = 87/169 (51.48%), Postives = 126/169 (74.56%), Query Frame = -2
Query:  137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643
            ++K+ +TDGY+A+Q+GY +V ++KL+KP LGHL+KS   P+++L+E+ ++S++ FE  Q  +   IF  G  V+VS  +IGKGF G  KRH+F RG M+HGSK+HRQ GSIGAGTTPGRVY GK M G+MG     I+ L+IV I+ +  ++++KGAVPGK G L++V+
Sbjct:   37 QIKSMSTDGYNAIQVGYKQVVEQKLSKPLLGHLKKSQSPPLKYLREYLVESIEDFEVSQVFS-TNIFEVGQKVNVSSKSIGKGFSGYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQMGNKKVTIKNLQIVSINIENDLLLLKGAVPGKQGALVKVS 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEPX (50S ribosomal protein L3 OS=Thermoanaerobacter sp. (strain X514) GN=rplC PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 81/164 (49.39%), Postives = 120/164 (73.17%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT  TDGY+A+Q+G+G V++K+LTKP +GH +K+G+   R+L+EFRL  + G+E G ++  + IF  GD V+V+G + GKGF G +KR+   RG M+HGSK HR++GS+ A T PGR +KGK MPG MG     I+ L++VK+D +L ++++KG+VPG  G+LL
Sbjct:   39 KTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVNVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMSATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DESHY (50S ribosomal protein L3 OS=Desulfitobacterium hafniense (strain Y51) GN=rplC PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43
Identity = 82/169 (48.52%), Postives = 120/169 (71.01%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT+ATDGY+A+Q+G+G +R++   KP+ GH+ K+ + PMR+++EFR+  V+ +E GQ +   E+F  GD VDV G + GKGF G IKRH   RG M HGSK HR+ GS+GA   P RV+KG+ +PGRMGG    ++ LK+V++D D  ++++KGAVPG   +LL + P+
Sbjct:   42 KTKATDGYNAIQVGFGALRERLANKPQKGHVAKASVKPMRYIREFRVDDVEAYEIGQVIT-AELFAAGDAVDVVGISKGKGFAGMIKRHGASRGPMKHGSKYHRRTGSLGA-KGPARVFKGRNLPGRMGGERVTVQNLKVVRVDADKNMILVKGAVPGAKKSLLILKPS 208          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_HELMI (50S ribosomal protein L3 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplC PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.654e-42
Identity = 85/166 (51.20%), Postives = 121/166 (72.89%), Query Frame = -2
Query:  140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637
            KT   DGY+AVQIG+G VR+K L KP+ GHL+ +G+  +R L+E ++ S+D ++ GQ+L   ++F+ G+ VDV GT+ GKGF GGIKRHNF+RG M HGSK HR+ GS GA   P R++KG+KMPGRMG     ++KL++V++D +  +++IKGAVPG    LL +
Sbjct:   40 KTVEKDGYEAVQIGFGDVREKLLNKPKRGHLKNAGVRLVRVLREIKVDSMDEYKVGQELK-ADVFSAGEYVDVVGTSKGKGFAGGIKRHNFKRGPMKHGSKYHRRPGSAGA-KGPARIFKGRKMPGRMGNERVTVQKLQVVRVDAERNLLLIKGAVPGPKRGLLLI 203          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_GRATL (50S ribosomal protein L3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl3 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 81/167 (48.50%), Postives = 119/167 (71.26%), Query Frame = -2
Query:  140 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 640
            +K   + GY A+QIGY +V   KL K ++GHL K  +  ++ L+E+++ S + ++ G+ +  E++ +    + VSGT+IGKGF G IKRHNF RG M+HGSK+HRQ GSIGAGTTPG+V+ GKKM GRMGG    I+ LKI+ I  +  ++++KG+VPGKPGN++ +
Sbjct:   38 IKKMESHGYAAIQIGYVKVNGNKLNKAQIGHLNKYNMPLVKFLKEYKVASTENYQIGKWITVEDL-SINQNISVSGTSIGKGFTGCIKRHNFSRGPMSHGSKNHRQPGSIGAGTTPGKVFAGKKMAGRMGGKKVTIQNLKIIDIKINNNLIIVKGSVPGKPGNIVSI 203          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORU7 (50S ribosomal protein L3 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 81/172 (47.09%), Postives = 116/172 (67.44%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T+  DGY+AVQI +G +  +K+ KPE GH +K+G+ P RH+ E R+    G+E GQ +  E IFNE D VDV+GT+ G GF GG+KRH F      HG+++ HR++G IG   TPGRV+KGK+M GRMG     ++ LK+ K+D D  +++IKGAVPG  G ++ V  A
Sbjct:   41 QVRTKDIDGYEAVQIAFGEIDPRKVNKPESGHFKKAGVTPRRHVAEIRVADASGYEVGQDVTVE-IFNEVDFVDVTGTSKGHGFAGGMKRHGFAGQGAAHGNQAAHRRVGGIGGAATPGRVFKGKRMAGRMGNNRVTMQNLKVAKVDTDSNLLLIKGAVPGINGGIVVVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.400e-41
Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = -2
Query:  164 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 643
            ++KT   DGY AVQ+G+G +R+  + KP+ GH  K+G+   R L+EFR ++   +  GQ++  + IF  GD +D +GT+ GKGFQG IKRH   RG M HGSK HR  GS GA TTPGRV+KGK MPG+MG     ++ L++VKID D  ++++KGAVPG
Sbjct:   37 QVKTVDNDGYAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVD-IFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKFHRHAGSNGAATTPGRVFKGKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPG 195          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALKMQ (50S ribosomal protein L3 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 83/176 (47.16%), Postives = 117/176 (66.48%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++K++ TDGY++VQ+GYG  + K   KP  GH +K+G  P R ++EFR+ S +GF AGQ+L   ++F  GD VDV+G + GKGFQG IKRH   RG M HGS+ HR+ GS+GA   PGRV+KGK +PG MG      + L+IV++D +  +++IKGAVPG    +L +      GK
Sbjct:   36 QIKSDETDGYNSVQVGYGEKKIKNTIKPLQGHFEKAGTTPKRTMKEFRVDSTEGFTAGQELK-ADLFQAGDKVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGASAYPGRVFKGKNLPGHMGNVQVTAQNLEIVRVDLEKNLLLIKGAVPGPKKGVLVIQTTVKQGK 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CARHZ (50S ribosomal protein L3 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.388e-41
Identity = 80/169 (47.34%), Postives = 121/169 (71.60%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT A DGY+A+Q+G+G +++ K+ KP  GH  ++ + PMR+L+E R++++D +E GQ++  + IF  G+ VDV+G + GKGF GGIKRH F RG M HGSK HR+ GS+GA   P RV+ G+K+PGR+G     I+ L++VK+D +  +++IKG+VPG  G+LL +  A
Sbjct:   39 KTIANDGYNAIQLGFGEIKESKVNKPLKGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVD-IFTVGEKVDVTGISKGKGFAGGIKRHGFHRGPMAHGSKYHRRPGSLGA-KGPARVFLGRKLPGRLGMERVTIQNLEVVKVDPERNLLVIKGSVPGIRGSLLIIKEA 205          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_ALKOO3.936e-4448.8650S ribosomal protein L3 OS=Alkaliphilus oremlandi... [more]
RK3_PORPU8.769e-4451.4850S ribosomal protein L3, chloroplastic OS=Porphyr... [more]
RL3_THEPX7.423e-4349.3950S ribosomal protein L3 OS=Thermoanaerobacter sp.... [more]
RL3_DESHY9.695e-4348.5250S ribosomal protein L3 OS=Desulfitobacterium haf... [more]
RL3_HELMI1.654e-4251.2050S ribosomal protein L3 OS=Heliobacterium modesti... [more]
RK3_GRATL8.207e-4248.5050S ribosomal protein L3, chloroplastic OS=Gracila... [more]
RL3_CORU71.072e-4147.0950S ribosomal protein L3 OS=Corynebacterium urealy... [more]
RL3_CLOPH1.400e-4150.0050S ribosomal protein L3 OS=Clostridium phytoferme... [more]
RL3_ALKMQ1.828e-4147.1650S ribosomal protein L3 OS=Alkaliphilus metallire... [more]
RL3_CARHZ2.388e-4147.3450S ribosomal protein L3 OS=Carboxydothermus hydro... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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