DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALKOO (50S ribosomal protein L3 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplC PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44 Identity = 86/176 (48.86%), Postives = 121/176 (68.75%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT DGY+A+Q+GYG++ ++ + KP GH K+G+ P R LQEFRL+S +GF AGQ+L ++F GD VD+SG + GKGFQG IKRHN RG M HGS+ HR GS+GA + P RV+KGKK+ G MG I+ L++VK+D + ++++KGAVPG LL + + GK Sbjct: 36 QVKTIEKDGYNAIQVGYGQINERNVNKPSKGHFDKAGVTPKRSLQEFRLESTEGFTAGQELK-ADLFKAGDKVDISGVSKGKGFQGVIKRHNQSRGPMAHGSRYHRGPGSMGAASYPSRVFKGKKLAGHMGHENVTIQNLEVVKVDVERNLLIVKGAVPGPKKGLLTINTSIKQGK 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PORPU (50S ribosomal protein L3, chloroplastic OS=Porphyra purpurea GN=rpl3 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 8.769e-44 Identity = 87/169 (51.48%), Postives = 126/169 (74.56%), Query Frame = -2 Query: 137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643 ++K+ +TDGY+A+Q+GY +V ++KL+KP LGHL+KS P+++L+E+ ++S++ FE Q + IF G V+VS +IGKGF G KRH+F RG M+HGSK+HRQ GSIGAGTTPGRVY GK M G+MG I+ L+IV I+ + ++++KGAVPGK G L++V+ Sbjct: 37 QIKSMSTDGYNAIQVGYKQVVEQKLSKPLLGHLKKSQSPPLKYLREYLVESIEDFEVSQVFS-TNIFEVGQKVNVSSKSIGKGFSGYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQMGNKKVTIKNLQIVSINIENDLLLLKGAVPGKQGALVKVS 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEPX (50S ribosomal protein L3 OS=Thermoanaerobacter sp. (strain X514) GN=rplC PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43 Identity = 81/164 (49.39%), Postives = 120/164 (73.17%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT TDGY+A+Q+G+G V++K+LTKP +GH +K+G+ R+L+EFRL + G+E G ++ + IF GD V+V+G + GKGF G +KR+ RG M+HGSK HR++GS+ A T PGR +KGK MPG MG I+ L++VK+D +L ++++KG+VPG G+LL Sbjct: 39 KTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVNVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMSATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DESHY (50S ribosomal protein L3 OS=Desulfitobacterium hafniense (strain Y51) GN=rplC PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43 Identity = 82/169 (48.52%), Postives = 120/169 (71.01%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT+ATDGY+A+Q+G+G +R++ KP+ GH+ K+ + PMR+++EFR+ V+ +E GQ + E+F GD VDV G + GKGF G IKRH RG M HGSK HR+ GS+GA P RV+KG+ +PGRMGG ++ LK+V++D D ++++KGAVPG +LL + P+ Sbjct: 42 KTKATDGYNAIQVGFGALRERLANKPQKGHVAKASVKPMRYIREFRVDDVEAYEIGQVIT-AELFAAGDAVDVVGISKGKGFAGMIKRHGASRGPMKHGSKYHRRTGSLGA-KGPARVFKGRNLPGRMGGERVTVQNLKVVRVDADKNMILVKGAVPGAKKSLLILKPS 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_HELMI (50S ribosomal protein L3 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplC PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.654e-42 Identity = 85/166 (51.20%), Postives = 121/166 (72.89%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 KT DGY+AVQIG+G VR+K L KP+ GHL+ +G+ +R L+E ++ S+D ++ GQ+L ++F+ G+ VDV GT+ GKGF GGIKRHNF+RG M HGSK HR+ GS GA P R++KG+KMPGRMG ++KL++V++D + +++IKGAVPG LL + Sbjct: 40 KTVEKDGYEAVQIGFGDVREKLLNKPKRGHLKNAGVRLVRVLREIKVDSMDEYKVGQELK-ADVFSAGEYVDVVGTSKGKGFAGGIKRHNFKRGPMKHGSKYHRRPGSAGA-KGPARIFKGRKMPGRMGNERVTVQKLQVVRVDAERNLLLIKGAVPGPKRGLLLI 203
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_GRATL (50S ribosomal protein L3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl3 PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42 Identity = 81/167 (48.50%), Postives = 119/167 (71.26%), Query Frame = -2 Query: 140 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 640 +K + GY A+QIGY +V KL K ++GHL K + ++ L+E+++ S + ++ G+ + E++ + + VSGT+IGKGF G IKRHNF RG M+HGSK+HRQ GSIGAGTTPG+V+ GKKM GRMGG I+ LKI+ I + ++++KG+VPGKPGN++ + Sbjct: 38 IKKMESHGYAAIQIGYVKVNGNKLNKAQIGHLNKYNMPLVKFLKEYKVASTENYQIGKWITVEDL-SINQNISVSGTSIGKGFTGCIKRHNFSRGPMSHGSKNHRQPGSIGAGTTPGKVFAGKKMAGRMGGKKVTIQNLKIIDIKINNNLIIVKGSVPGKPGNIVSI 203
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORU7 (50S ribosomal protein L3 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplC PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41 Identity = 81/172 (47.09%), Postives = 116/172 (67.44%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T+ DGY+AVQI +G + +K+ KPE GH +K+G+ P RH+ E R+ G+E GQ + E IFNE D VDV+GT+ G GF GG+KRH F HG+++ HR++G IG TPGRV+KGK+M GRMG ++ LK+ K+D D +++IKGAVPG G ++ V A Sbjct: 41 QVRTKDIDGYEAVQIAFGEIDPRKVNKPESGHFKKAGVTPRRHVAEIRVADASGYEVGQDVTVE-IFNEVDFVDVTGTSKGHGFAGGMKRHGFAGQGAAHGNQAAHRRVGGIGGAATPGRVFKGKRMAGRMGNNRVTMQNLKVAKVDTDSNLLLIKGAVPGINGGIVVVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.400e-41 Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = -2 Query: 164 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 643 ++KT DGY AVQ+G+G +R+ + KP+ GH K+G+ R L+EFR ++ + GQ++ + IF GD +D +GT+ GKGFQG IKRH RG M HGSK HR GS GA TTPGRV+KGK MPG+MG ++ L++VKID D ++++KGAVPG Sbjct: 37 QVKTVDNDGYAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVD-IFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKFHRHAGSNGAATTPGRVFKGKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPG 195
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ALKMQ (50S ribosomal protein L3 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41 Identity = 83/176 (47.16%), Postives = 117/176 (66.48%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++K++ TDGY++VQ+GYG + K KP GH +K+G P R ++EFR+ S +GF AGQ+L ++F GD VDV+G + GKGFQG IKRH RG M HGS+ HR+ GS+GA PGRV+KGK +PG MG + L+IV++D + +++IKGAVPG +L + GK Sbjct: 36 QIKSDETDGYNSVQVGYGEKKIKNTIKPLQGHFEKAGTTPKRTMKEFRVDSTEGFTAGQELK-ADLFQAGDKVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGASAYPGRVFKGKNLPGHMGNVQVTAQNLEIVRVDLEKNLLLIKGAVPGPKKGVLVIQTTVKQGK 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CARHZ (50S ribosomal protein L3 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplC PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.388e-41 Identity = 80/169 (47.34%), Postives = 121/169 (71.60%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT A DGY+A+Q+G+G +++ K+ KP GH ++ + PMR+L+E R++++D +E GQ++ + IF G+ VDV+G + GKGF GGIKRH F RG M HGSK HR+ GS+GA P RV+ G+K+PGR+G I+ L++VK+D + +++IKG+VPG G+LL + A Sbjct: 39 KTIANDGYNAIQLGFGEIKESKVNKPLKGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVD-IFTVGEKVDVTGISKGKGFAGGIKRHGFHRGPMAHGSKYHRRPGSLGA-KGPARVFLGRKLPGRLGMERVTIQNLEVVKVDPERNLLVIKGSVPGIRGSLLIIKEA 205 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |