DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNWW (50S ribosomal protein L3 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 76/158 (48.10%), Postives = 117/158 (74.05%), Query Frame = -2
Query:  164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637
            K   +DGY+++Q+G+  +++K   KP  GH +K+ + P+R+++EFR+ +VD ++ GQ++   +IF  GDLVDV GT+ GKGF GG+KRHNF RG+M HGSK HR+ GS+GA   P RV+KG+K+PGR+GG    ++ LK+VK+  D  +++IKG++PG
Sbjct:   42 KKVESDGYESIQVGFYNLKEKLANKPARGHFKKANVKPLRYIKEFRIDNVDDYDVGQEIT-ADIFTTGDLVDVIGTSKGKGFAGGVKRHNFARGSMGHGSKYHRRPGSLGA-KGPARVFKGRKLPGRLGGERVTVQGLKVVKVYPDRNLILIKGSIPG 197          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORGL (50S ribosomal protein L3 OS=Corynebacterium glutamicum GN=rplC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T  TDGY+A+QI YG +  +K+ +P  GH +K+G+ P RH+ E R+  V G+E GQ +  E IFN+   VDV+GTT GKG+ G +KRH F      HG+++ HR++G IGA  TPGR++KGK+M GRMG      + LK+ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORGB (50S ribosomal protein L3 OS=Corynebacterium glutamicum (strain R) GN=rplC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T  TDGY+A+QI YG +  +K+ +P  GH +K+G+ P RH+ E R+  V G+E GQ +  E IFN+   VDV+GTT GKG+ G +KRH F      HG+++ HR++G IGA  TPGR++KGK+M GRMG      + LK+ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_EMIHU (50S ribosomal protein L3, chloroplastic OS=Emiliania huxleyi GN=rpl3 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.948e-41
Identity = 82/169 (48.52%), Postives = 113/169 (66.86%), Query Frame = -2
Query:  137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643
            ++KT  TDGYDA+Q+GY   +  K++KP  GHLQK G    R   EFR++  + +  G ++     F+ G  V V+GT+IGKGF G  KRHNF RG MTHGSK+HR  GSIGAG+TPGRVY GKKM G +G T   I+  +I+ +     ++++KG++PGK  N+LR+A
Sbjct:   37 QIKTTKTDGYDAIQVGYLEEKLSKISKPIQGHLQKCGSTGYRKFGEFRVEDPETYNLGDQIT-TSAFSVGQKVRVTGTSIGKGFAGNQKRHNFSRGPMTHGSKNHRLPGSIGAGSTPGRVYPGKKMAGHLGNTKTTIKNSEILFVSEKENILILKGSLPGKAKNILRIA 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_COREF (50S ribosomal protein L3 OS=Corynebacterium efficiens GN=rplC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T  TDGY+A+QI YG +  +K+ +P  GH +K+G+ P RH+ E R+  V G+E GQ +  E IFN+   VDV+GT+ GKG+ G +KRH F      HG+++ HR++G IGA  TPGR++KGK+M GRMG      + LK+ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDVKFVDVTGTSKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANLILIKGAIPGNRGGIVTVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOTH (50S ribosomal protein L3 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40
Identity = 78/166 (46.99%), Postives = 113/166 (68.07%), Query Frame = -2
Query:  140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637
            K   TDGY++V++ +G V++K+L KPE G   K G+ P ++++EFR+   D +E  Q++  EE+F  GD VDV+G + GKGF G IKR   RRG  THGS  HR++GS+GA T P RV+KGKK+PG MG     ++ L +VK+D +  ++++KGAVPG  G LL +
Sbjct:   39 KKPETDGYNSVRVAFGDVQEKRLNKPEKGLFAKLGIAPKKYIREFRVDDPDKYELKQEIKVEEMFQPGDRVDVTGISKGKGFAGVIKRFGNRRGKETHGSMYHRRVGSMGANTNPARVFKGKKLPGHMGVERVTVQNLDVVKVDAERNLMLVKGAVPGAKGGLLMI 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLO (50S ribosomal protein L3 OS=Bifidobacterium longum GN=rplC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -2
Query:  131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640
            +KTE +DGY AVQ+GYG +   K+TKP  GH  K+G+ P RHL E R   VD FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA  TP R+ KGK+M GRMG  T   + L +V  D +  ++ IKGA+PG  G ++ V  A
Sbjct:   40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKGAIPGPKGGIVLVRSA 209          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLD (50S ribosomal protein L3 OS=Bifidobacterium longum (strain DJO10A) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -2
Query:  131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640
            +KTE +DGY AVQ+GYG +   K+TKP  GH  K+G+ P RHL E R   VD FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA  TP R+ KGK+M GRMG  T   + L +V  D +  ++ IKGA+PG  G ++ V  A
Sbjct:   40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKGAIPGPKGGIVLVRSA 209          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANATD (50S ribosomal protein L3 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 78/164 (47.56%), Postives = 111/164 (67.68%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT   DGY A+Q+G+  +++ KL KP  GH  K G+ P R L+E RL+  D +E GQ++  + IF  G+ VDV+G +  KGFQG IKRH  +RG M+HGS  HR++GS+G+ T P R + GKKMPGRMGG    +  L++VK+D D  ++++KG+VPG   +LL
Sbjct:   39 KTVEKDGYSAIQVGFEDIKESKLNKPLRGHFAKHGVKPKRFLRELRLKDADKYEVGQEIRVD-IFQPGEKVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGERVTVLNLQVVKVDPDRNLLLVKGSVPGNKNSLL 201          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLI (50S ribosomal protein L3 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplC PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.882e-40
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = -2
Query:  131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640
            +KTE +DGY AVQ+GYG +   K+TKP  GH  K+G+ P RHL E R   VD FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA  TP R+ KGK+M GRMG  T   + L IV  D +  ++ IKGA+PG  G ++ V  A
Sbjct:   40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLIIVSADVENGILAIKGAIPGPKGGIVLVRSA 209          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SYNWW3.119e-4148.1050S ribosomal protein L3 OS=Syntrophomonas wolfei ... [more]
RL3_CORGL3.119e-4145.9350S ribosomal protein L3 OS=Corynebacterium glutam... [more]
RL3_CORGB3.119e-4145.9350S ribosomal protein L3 OS=Corynebacterium glutam... [more]
RK3_EMIHU6.948e-4148.5250S ribosomal protein L3, chloroplastic OS=Emilian... [more]
RL3_COREF1.185e-4045.3550S ribosomal protein L3 OS=Corynebacterium effici... [more]
RL3_CLOTH1.185e-4046.9950S ribosomal protein L3 OS=Clostridium thermocell... [more]
RL3_BIFLO4.503e-4050.8850S ribosomal protein L3 OS=Bifidobacterium longum... [more]
RL3_BIFLD4.503e-4050.8850S ribosomal protein L3 OS=Bifidobacterium longum... [more]
RL3_ANATD4.503e-4047.5650S ribosomal protein L3 OS=Anaerocellum thermophi... [more]
RL3_BIFLI5.882e-4051.4650S ribosomal protein L3 OS=Bifidobacterium longum... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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