DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNWW (50S ribosomal protein L3 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41 Identity = 76/158 (48.10%), Postives = 117/158 (74.05%), Query Frame = -2 Query: 164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637 K +DGY+++Q+G+ +++K KP GH +K+ + P+R+++EFR+ +VD ++ GQ++ +IF GDLVDV GT+ GKGF GG+KRHNF RG+M HGSK HR+ GS+GA P RV+KG+K+PGR+GG ++ LK+VK+ D +++IKG++PG Sbjct: 42 KKVESDGYESIQVGFYNLKEKLANKPARGHFKKANVKPLRYIKEFRIDNVDDYDVGQEIT-ADIFTTGDLVDVIGTSKGKGFAGGVKRHNFARGSMGHGSKYHRRPGSLGA-KGPARVFKGRKLPGRLGGERVTVQGLKVVKVYPDRNLILIKGSIPG 197
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORGL (50S ribosomal protein L3 OS=Corynebacterium glutamicum GN=rplC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41 Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T TDGY+A+QI YG + +K+ +P GH +K+G+ P RH+ E R+ V G+E GQ + E IFN+ VDV+GTT GKG+ G +KRH F HG+++ HR++G IGA TPGR++KGK+M GRMG + LK+ KID D +++IKGA+PG G ++ V A Sbjct: 41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORGB (50S ribosomal protein L3 OS=Corynebacterium glutamicum (strain R) GN=rplC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41 Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T TDGY+A+QI YG + +K+ +P GH +K+G+ P RH+ E R+ V G+E GQ + E IFN+ VDV+GTT GKG+ G +KRH F HG+++ HR++G IGA TPGR++KGK+M GRMG + LK+ KID D +++IKGA+PG G ++ V A Sbjct: 41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANIILIKGAIPGNRGGIVTVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_EMIHU (50S ribosomal protein L3, chloroplastic OS=Emiliania huxleyi GN=rpl3 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.948e-41 Identity = 82/169 (48.52%), Postives = 113/169 (66.86%), Query Frame = -2 Query: 137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643 ++KT TDGYDA+Q+GY + K++KP GHLQK G R EFR++ + + G ++ F+ G V V+GT+IGKGF G KRHNF RG MTHGSK+HR GSIGAG+TPGRVY GKKM G +G T I+ +I+ + ++++KG++PGK N+LR+A Sbjct: 37 QIKTTKTDGYDAIQVGYLEEKLSKISKPIQGHLQKCGSTGYRKFGEFRVEDPETYNLGDQIT-TSAFSVGQKVRVTGTSIGKGFAGNQKRHNFSRGPMTHGSKNHRLPGSIGAGSTPGRVYPGKKMAGHLGNTKTTIKNSEILFVSEKENILILKGSLPGKAKNILRIA 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_COREF (50S ribosomal protein L3 OS=Corynebacterium efficiens GN=rplC PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40 Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T TDGY+A+QI YG + +K+ +P GH +K+G+ P RH+ E R+ V G+E GQ + E IFN+ VDV+GT+ GKG+ G +KRH F HG+++ HR++G IGA TPGR++KGK+M GRMG + LK+ KID D +++IKGA+PG G ++ V A Sbjct: 41 QIRTVETDGYNAIQIAYGEIDPRKVNQPLTGHFKKAGVTPRRHVTEIRMDDVSGYEVGQDVTVE-IFNDVKFVDVTGTSKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGKRMAGRMGNDRVTTQNLKVQKIDADANLILIKGAIPGNRGGIVTVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOTH (50S ribosomal protein L3 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplC PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40 Identity = 78/166 (46.99%), Postives = 113/166 (68.07%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 K TDGY++V++ +G V++K+L KPE G K G+ P ++++EFR+ D +E Q++ EE+F GD VDV+G + GKGF G IKR RRG THGS HR++GS+GA T P RV+KGKK+PG MG ++ L +VK+D + ++++KGAVPG G LL + Sbjct: 39 KKPETDGYNSVRVAFGDVQEKRLNKPEKGLFAKLGIAPKKYIREFRVDDPDKYELKQEIKVEEMFQPGDRVDVTGISKGKGFAGVIKRFGNRRGKETHGSMYHRRVGSMGANTNPARVFKGKKLPGHMGVERVTVQNLDVVKVDAERNLMLVKGAVPGAKGGLLMI 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLO (50S ribosomal protein L3 OS=Bifidobacterium longum GN=rplC PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -2 Query: 131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640 +KTE +DGY AVQ+GYG + K+TKP GH K+G+ P RHL E R VD FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA TP R+ KGK+M GRMG T + L +V D + ++ IKGA+PG G ++ V A Sbjct: 40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKGAIPGPKGGIVLVRSA 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLD (50S ribosomal protein L3 OS=Bifidobacterium longum (strain DJO10A) GN=rplC PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -2 Query: 131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640 +KTE +DGY AVQ+GYG + K+TKP GH K+G+ P RHL E R VD FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA TP R+ KGK+M GRMG T + L +V D + ++ IKGA+PG G ++ V A Sbjct: 40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKGAIPGPKGGIVLVRSA 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANATD (50S ribosomal protein L3 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplC PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40 Identity = 78/164 (47.56%), Postives = 111/164 (67.68%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT DGY A+Q+G+ +++ KL KP GH K G+ P R L+E RL+ D +E GQ++ + IF G+ VDV+G + KGFQG IKRH +RG M+HGS HR++GS+G+ T P R + GKKMPGRMGG + L++VK+D D ++++KG+VPG +LL Sbjct: 39 KTVEKDGYSAIQVGFEDIKESKLNKPLRGHFAKHGVKPKRFLRELRLKDADKYEVGQEIRVD-IFQPGEKVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGERVTVLNLQVVKVDPDRNLLLVKGSVPGNKNSLL 201
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFLI (50S ribosomal protein L3 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplC PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.882e-40 Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = -2 Query: 131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640 +KTE +DGY AVQ+GYG + K+TKP GH K+G+ P RHL E R VD FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA TP R+ KGK+M GRMG T + L IV D + ++ IKGA+PG G ++ V A Sbjct: 40 VKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLIIVSADVENGILAIKGAIPGPKGGIVLVRSA 209 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |