DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CALS8 (50S ribosomal protein L3 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplC PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39
Identity = 77/164 (46.95%), Postives = 113/164 (68.90%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT   DGY A+Q+G+  +++ KL KP  GH  K G+ P R+L+E RL+  D +E GQ++  + IF+ G+ VDV+G +  KGFQG IKRH  +RG M+HGS  HR++GS+G+ T P R + GKKMPGRMGG    +  L++VK+D +  ++++KG+VPG   +LL
Sbjct:   39 KTVEKDGYAAIQVGFEDIKETKLNKPLRGHFAKHGVKPKRYLRELRLKDADKYEVGQEIRVD-IFSPGERVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGQRVTVLNLQVVKVDPERNLLLVKGSVPGNKNSLL 201          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORDI (50S ribosomal protein L3 OS=Corynebacterium diphtheriae GN=rplC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39
Identity = 79/172 (45.93%), Postives = 112/172 (65.12%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T  TDGY+A+QI YG +  +K  KP  GH +K+G+ P RH+ E R+  V G+E GQ +  E IF   + VDV+GTT GKG+ G +KRH F      HG+++ HR++G IGA  TPGRV+KG +M GRMG      + LK+ KID D  +++IKGA+PG  G ++ V  A
Sbjct:   41 QIRTVETDGYNAIQIAYGEIDPRKANKPAAGHFKKAGVTPRRHVAEIRMDDVSGYELGQDVTVE-IFEGINFVDVTGTTKGKGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGSDRVTTQNLKVQKIDADANLILIKGAIPGVRGGIVTVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORJK (50S ribosomal protein L3 OS=Corynebacterium jeikeium (strain K411) GN=rplC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++++ TDGY+AVQI +G +  +K+ KP  GH +K+G+ P RH+ E R+     +E GQ +  + IFN+   VDV+GTT GKG+ GG+KRH F      HG+++ HR++GSIG   TPGRV+KGK+M GRMG      + LK+ K+D +  +++IKGAVPG  G L+ V  A
Sbjct:   41 QVRSKETDGYEAVQIAFGEIDPRKVNKPAAGHFKKAGVTPRRHVAEIRVADASSYEVGQDVTVD-IFNDVKFVDVTGTTKGKGYAGGMKRHGFAGQGAAHGNQAAHRRVGSIGQAATPGRVFKGKRMAGRMGNDRVTQQNLKLAKVDAESNLLLIKGAVPGVNGGLVVVKTA 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOK5 (50S ribosomal protein L3 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = -2
Query:  164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637
            KTE  DGY ++QIG+G +R+K + KP  GH  KSG+   R L+EF++ ++D +E GQ++   +IF EGD +DVSG + GKGFQG I+R N +RG M+HGSK HR +GS+GA + P R +K KKMPG MG     +  L++ K+  +  +++IKG VPG
Sbjct:   39 KTEEKDGYKSIQIGFGDIREKLVNKPLKGHFAKSGVSLKRFLKEFKVDNIDEYEVGQEIK-ADIFAEGDRIDVSGISKGKGFQGVIRRWNAQRGPMSHGSKFHRAVGSMGASSDPSRTFKNKKMPGHMGNKNTTVLNLQVAKVIPEKNIILIKGGVPG 195          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOK1 (50S ribosomal protein L3 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = -2
Query:  164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637
            KTE  DGY ++QIG+G +R+K + KP  GH  KSG+   R L+EF++ ++D +E GQ++   +IF EGD +DVSG + GKGFQG I+R N +RG M+HGSK HR +GS+GA + P R +K KKMPG MG     +  L++ K+  +  +++IKG VPG
Sbjct:   39 KTEEKDGYKSIQIGFGDIREKLVNKPLKGHFAKSGVSLKRFLKEFKVDNIDEYEVGQEIK-ADIFAEGDRIDVSGISKGKGFQGVIRRWNAQRGPMSHGSKFHRAVGSMGASSDPSRTFKNKKMPGHMGNKNTTVLNLQVAKVIPEKNIILIKGGVPG 195          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACP2 (50S ribosomal protein L3 OS=Bacillus pumilus (strain SAFR-032) GN=rplC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT  TDGY+A+QIG+   R+K   KPE GH+ K+   P R ++E R   +D +E GQ++  + IF  GD+VDV+GT+ GKGFQG IKRH   RG MTHGS+ HR+ GS+G    P RV+KGK +PGRMGG    ++ L+IVK+D +  +++IKG VPG   +L+ V  A
Sbjct:   39 KTTDTDGYEAIQIGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGAELDAYEVGQEVKVD-IFANGDIVDVTGTSKGKGFQGAIKRHGQSRGPMTHGSRYHRRPGSMGP-VDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLVTVKSA 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPH (50S ribosomal protein L3 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rplC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT A DGY AVQ+  G  +  K++KP  GH  K+ +       EFR+ S D F  GQ ++  ++F  G  VDVSG T GKGF G +KRHNFR    +HG S+SHR  GSIG   TPGRV+KGKKM G MG     I+ L++VK+D++  +++IKGA+PG PG+ + + PA
Sbjct:   37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPC (50S ribosomal protein L3 OS=Legionella pneumophila (strain Corby) GN=rplC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT A DGY AVQ+  G  +  K++KP  GH  K+ +       EFR+ S D F  GQ ++  ++F  G  VDVSG T GKGF G +KRHNFR    +HG S+SHR  GSIG   TPGRV+KGKKM G MG     I+ L++VK+D++  +++IKGA+PG PG+ + + PA
Sbjct:   37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPA (50S ribosomal protein L3 OS=Legionella pneumophila (strain Paris) GN=rplC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT A DGY AVQ+  G  +  K++KP  GH  K+ +       EFR+ S D F  GQ ++  ++F  G  VDVSG T GKGF G +KRHNFR    +HG S+SHR  GSIG   TPGRV+KGKKM G MG     I+ L++VK+D++  +++IKGA+PG PG+ + + PA
Sbjct:   37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DESRM (50S ribosomal protein L3 OS=Desulfotomaculum reducens (strain MI-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 80/166 (48.19%), Postives = 111/166 (66.87%), Query Frame = -2
Query:  140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637
            +T   DGY A+Q+G+G  R+  L KP  GHL K+G+ P+R L+E ++  ++ F+ GQ++   +IF EG+ VDV GT+ GKGF GGIKRHNF RG M HGSK HR+ GS  A   P R +KG+K+PG  G     ++ L++VK+D +  ++ IKGAVPG  G LL V
Sbjct:   39 RTPENDGYSAIQLGFGVKRENLLNKPTKGHLNKAGVRPVRFLRELKVDDLEAFQVGQEIK-ADIFAEGEKVDVVGTSKGKGFAGGIKRHNFHRGPMAHGSKYHRRPGS-SAAKGPARTFKGRKLPGHYGVERVTVQNLQVVKVDPERNLLAIKGAVPGPRGGLLLV 202          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_CALS81.003e-3946.9550S ribosomal protein L3 OS=Caldicellulosiruptor s... [more]
RL3_CORDI1.711e-3945.9350S ribosomal protein L3 OS=Corynebacterium diphth... [more]
RL3_CORJK2.235e-3945.3550S ribosomal protein L3 OS=Corynebacterium jeikei... [more]
RL3_CLOK52.235e-3948.1050S ribosomal protein L3 OS=Clostridium kluyveri (... [more]
RL3_CLOK12.235e-3948.1050S ribosomal protein L3 OS=Clostridium kluyveri (... [more]
RL3_BACP22.235e-3949.1150S ribosomal protein L3 OS=Bacillus pumilus (stra... [more]
RL3_LEGPH2.919e-3947.0950S ribosomal protein L3 OS=Legionella pneumophila... [more]
RL3_LEGPC2.919e-3947.0950S ribosomal protein L3 OS=Legionella pneumophila... [more]
RL3_LEGPA2.919e-3947.0950S ribosomal protein L3 OS=Legionella pneumophila... [more]
RL3_DESRM2.919e-3948.1950S ribosomal protein L3 OS=Desulfotomaculum reduc... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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