DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CALS8 (50S ribosomal protein L3 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplC PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39 Identity = 77/164 (46.95%), Postives = 113/164 (68.90%), Query Frame = -2 Query: 146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637 KT DGY A+Q+G+ +++ KL KP GH K G+ P R+L+E RL+ D +E GQ++ + IF+ G+ VDV+G + KGFQG IKRH +RG M+HGS HR++GS+G+ T P R + GKKMPGRMGG + L++VK+D + ++++KG+VPG +LL Sbjct: 39 KTVEKDGYAAIQVGFEDIKETKLNKPLRGHFAKHGVKPKRYLRELRLKDADKYEVGQEIRVD-IFSPGERVDVTGISKAKGFQGVIKRHGQQRGPMSHGSMYHRRVGSMGSNTFPARTFPGKKMPGRMGGQRVTVLNLQVVKVDPERNLLLVKGSVPGNKNSLL 201
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORDI (50S ribosomal protein L3 OS=Corynebacterium diphtheriae GN=rplC PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39 Identity = 79/172 (45.93%), Postives = 112/172 (65.12%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T TDGY+A+QI YG + +K KP GH +K+G+ P RH+ E R+ V G+E GQ + E IF + VDV+GTT GKG+ G +KRH F HG+++ HR++G IGA TPGRV+KG +M GRMG + LK+ KID D +++IKGA+PG G ++ V A Sbjct: 41 QIRTVETDGYNAIQIAYGEIDPRKANKPAAGHFKKAGVTPRRHVAEIRMDDVSGYELGQDVTVE-IFEGINFVDVTGTTKGKGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGTRMAGRMGSDRVTTQNLKVQKIDADANLILIKGAIPGVRGGIVTVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CORJK (50S ribosomal protein L3 OS=Corynebacterium jeikeium (strain K411) GN=rplC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39 Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++++ TDGY+AVQI +G + +K+ KP GH +K+G+ P RH+ E R+ +E GQ + + IFN+ VDV+GTT GKG+ GG+KRH F HG+++ HR++GSIG TPGRV+KGK+M GRMG + LK+ K+D + +++IKGAVPG G L+ V A Sbjct: 41 QVRSKETDGYEAVQIAFGEIDPRKVNKPAAGHFKKAGVTPRRHVAEIRVADASSYEVGQDVTVD-IFNDVKFVDVTGTTKGKGYAGGMKRHGFAGQGAAHGNQAAHRRVGSIGQAATPGRVFKGKRMAGRMGNDRVTQQNLKLAKVDAESNLLLIKGAVPGVNGGLVVVKTA 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOK5 (50S ribosomal protein L3 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39 Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = -2 Query: 164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637 KTE DGY ++QIG+G +R+K + KP GH KSG+ R L+EF++ ++D +E GQ++ +IF EGD +DVSG + GKGFQG I+R N +RG M+HGSK HR +GS+GA + P R +K KKMPG MG + L++ K+ + +++IKG VPG Sbjct: 39 KTEEKDGYKSIQIGFGDIREKLVNKPLKGHFAKSGVSLKRFLKEFKVDNIDEYEVGQEIK-ADIFAEGDRIDVSGISKGKGFQGVIRRWNAQRGPMSHGSKFHRAVGSMGASSDPSRTFKNKKMPGHMGNKNTTVLNLQVAKVIPEKNIILIKGGVPG 195
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOK1 (50S ribosomal protein L3 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39 Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = -2 Query: 164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637 KTE DGY ++QIG+G +R+K + KP GH KSG+ R L+EF++ ++D +E GQ++ +IF EGD +DVSG + GKGFQG I+R N +RG M+HGSK HR +GS+GA + P R +K KKMPG MG + L++ K+ + +++IKG VPG Sbjct: 39 KTEEKDGYKSIQIGFGDIREKLVNKPLKGHFAKSGVSLKRFLKEFKVDNIDEYEVGQEIK-ADIFAEGDRIDVSGISKGKGFQGVIRRWNAQRGPMSHGSKFHRAVGSMGASSDPSRTFKNKKMPGHMGNKNTTVLNLQVAKVIPEKNIILIKGGVPG 195
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACP2 (50S ribosomal protein L3 OS=Bacillus pumilus (strain SAFR-032) GN=rplC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39 Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT TDGY+A+QIG+ R+K KPE GH+ K+ P R ++E R +D +E GQ++ + IF GD+VDV+GT+ GKGFQG IKRH RG MTHGS+ HR+ GS+G P RV+KGK +PGRMGG ++ L+IVK+D + +++IKG VPG +L+ V A Sbjct: 39 KTTDTDGYEAIQIGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGAELDAYEVGQEVKVD-IFANGDIVDVTGTSKGKGFQGAIKRHGQSRGPMTHGSRYHRRPGSMGP-VDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLVTVKSA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPH (50S ribosomal protein L3 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT A DGY AVQ+ G + K++KP GH K+ + EFR+ S D F GQ ++ ++F G VDVSG T GKGF G +KRHNFR +HG S+SHR GSIG TPGRV+KGKKM G MG I+ L++VK+D++ +++IKGA+PG PG+ + + PA Sbjct: 37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPC (50S ribosomal protein L3 OS=Legionella pneumophila (strain Corby) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT A DGY AVQ+ G + K++KP GH K+ + EFR+ S D F GQ ++ ++F G VDVSG T GKGF G +KRHNFR +HG S+SHR GSIG TPGRV+KGKKM G MG I+ L++VK+D++ +++IKGA+PG PG+ + + PA Sbjct: 37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPA (50S ribosomal protein L3 OS=Legionella pneumophila (strain Paris) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT A DGY AVQ+ G + K++KP GH K+ + EFR+ S D F GQ ++ ++F G VDVSG T GKGF G +KRHNFR +HG S+SHR GSIG TPGRV+KGKKM G MG I+ L++VK+D++ +++IKGA+PG PG+ + + PA Sbjct: 37 QVKTAANDGYSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_DESRM (50S ribosomal protein L3 OS=Desulfotomaculum reducens (strain MI-1) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 80/166 (48.19%), Postives = 111/166 (66.87%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 +T DGY A+Q+G+G R+ L KP GHL K+G+ P+R L+E ++ ++ F+ GQ++ +IF EG+ VDV GT+ GKGF GGIKRHNF RG M HGSK HR+ GS A P R +KG+K+PG G ++ L++VK+D + ++ IKGAVPG G LL V Sbjct: 39 RTPENDGYSAIQLGFGVKRENLLNKPTKGHLNKAGVRPVRFLRELKVDDLEAFQVGQEIK-ADIFAEGEKVDVVGTSKGKGFAGGIKRHNFHRGPMAHGSKYHRRPGS-SAAKGPARTFKGRKLPGHYGVERVTVQNLQVVKVDPERNLLAIKGAVPGPRGGLLLV 202 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |