DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BRAHW (50S ribosomal protein L3 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 78/181 (43.09%), Postives = 118/181 (65.19%), Query Frame = -2 Query: 101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643 +++ DGY A+Q+GYG V++K L KP++G +K+ L P ++L+EFR+ + GQ+L +IF GD +DVS + G+GF G +KRHN+ G M+HGS R+ GSIG + P RV+KGK MPG MG T I+ LK+V+I D ++MIKGA+PG +++++ A + +N KN Sbjct: 36 QIRDNEKDGYSAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRMDDASSYTVGQELK-ADIFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRAGSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPDDNLIMIKGAIPGAINSIVKLTSA-VKKRNKKKN 214
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BIFAA (50S ribosomal protein L3 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -2 Query: 131 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 640 +K+E +DGY AVQ+GYG+V K+TKP GH K+G+ P RHL E R + + FE GQ+L E+F EG LVDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA TP R+ KGK+M GRMG T L IV D + V+ IKGA+PG G+++ V A Sbjct: 40 VKSEESDGYKAVQLGYGQVDPTKVTKPLAGHFAKAGVTPRRHLAEVRTDNAEEFEPGQELT-AELFPEGTLVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTNTALNLTIVSSDVENGVLAIKGAIPGPKGSIVLVRSA 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLONN (50S ribosomal protein L3 OS=Clostridium novyi (strain NT) GN=rplC PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39 Identity = 76/158 (48.10%), Postives = 108/158 (68.35%), Query Frame = -2 Query: 164 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 637 KTE DGY+A+Q+G+ +R+K KP+ GH K+G+ R ++EFRL+++D +E G ++ ++F GD VDV+G + GKGFQG IKR NF RG M HGSK HR +GS+GA + P R +K KKMPG MG I +++VK+ D V++IKG +PG Sbjct: 39 KTEEKDGYNAIQVGFEDIREKLANKPKKGHFAKAGVSLKRIVREFRLENIDEYEVGTEIK-ADVFAAGDKVDVTGVSKGKGFQGTIKRWNFHRGPMAHGSKYHRAVGSMGAASDPSRTFKNKKMPGHMGNKKSTILNIEVVKVMADKNVLLIKGGIPG 195
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LEGPL (50S ribosomal protein L3 OS=Legionella pneumophila (strain Lens) GN=rplC PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.979e-39 Identity = 81/172 (47.09%), Postives = 111/172 (64.53%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT A DGY AVQ+ G + K++KP GH K+ + EFR+ S D F GQ ++ ++F G VDVSG T GKGF G +KRHNFR +HG S+SHR GSIG TPGRV+KGKKM G MG I+ L++VK+D++ +++IKGA+PG PG+ + + PA Sbjct: 37 QVKTAANDGYSAVQLTGGIKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVFTAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGKKMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPA 208
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOD6 (50S ribosomal protein L3 OS=Clostridium difficile (strain 630) GN=rplC PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.979e-39 Identity = 77/176 (43.75%), Postives = 120/176 (68.18%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT DGY+A+QIG+ ++K L KP+ GHL + ++ +HL+EFR+ SV+G+ GQ++ ++F G +DV+G + GKGFQG IKRH RG THGS+ HR+ GS+GA + PGRV+K KK+ G MG ++ L++VK+D D ++++KGA+PG G+++ + A V K Sbjct: 36 QIKTVDKDGYNAIQIGFEDAKEKALNKPKKGHLAAANVLK-KHLKEFRVDSVEGYTVGQEIK-ADVFEAGAKIDVTGISKGKGFQGPIKRHGQSRGPETHGSRYHRRPGSMGACSYPGRVFKNKKLAGHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAIKVSK 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_LYSSC (50S ribosomal protein L3 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39 Identity = 82/169 (48.52%), Postives = 113/169 (66.86%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT TDGY+A+Q+G+ R K KP+ GH+ K+ P R ++EFR +V+ +E GQ++ E IF EGD++DV+G T GKGFQG IKRH RG M HGS+ HR+ GS+G P RV+K KK+PG+MGG I+ L+IVK+D D ++++KG VPG L+ V A Sbjct: 39 KTVETDGYEAIQVGFEDKRVKLSNKPQQGHVAKANTAPKRFIREFRNVNVEEYEVGQEVKVE-IFAEGDVIDVTGVTKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGP-VAPNRVFKQKKLPGQMGGNVVTIQNLEIVKVDTDRNLLLVKGNVPGSKKALVTVKTA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_FERNB (50S ribosomal protein L3 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39 Identity = 77/169 (45.56%), Postives = 113/169 (66.86%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT DGY+A+Q+G+ V +KKLTKP LG +K+ + PMR L+EFR+++VD + GQ++ IF EGD +D++G T G+G+ G +KR NF+ G HG+K HR+LGS+G T P R++KGK+MPGR G I ++V ID ++ +KG VPG G+L+ + A Sbjct: 37 KTVEKDGYNAIQLGFEEVNEKKLTKPMLGVFKKANVKPMRVLKEFRVENVDQYSVGQEITVA-IFQEGDKIDITGWTKGRGYSGAMKRWNFQGGPKAHGAKFHRELGSVGQHTEPARIFKGKRMPGRYGNERVTILNSEVVTIDAQNNLLAVKGGVPGARGSLVIIRSA 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PETMO (50S ribosomal protein L3 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplC PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39 Identity = 77/169 (45.56%), Postives = 114/169 (67.46%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT TDGY+A+QIG+ + ++K KP +GH +K+ + P+R+L+EFR+++VD +E GQK+ IF+EG+ +D+ G + G+G+ G +KR NFR G THGSK HR LGS G T P +V+KGKKMPG+ G I+ ++V ID ++ +KG VPG G L+ + A Sbjct: 37 KTVETDGYNAIQIGFEEIPERKANKPLMGHFKKAQVKPLRYLREFRVENVDDYEIGQKIDVT-IFSEGEKIDLIGNSKGRGYSGVMKRWNFRGGENTHGSKFHRGLGSTGMATFPSKVFKGKKMPGQYGNERVTIQNSEVVYIDVQNNLIAVKGGVPGARGGLVTIREA 204
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_EXISA (50S ribosomal protein L3 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplC PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39 Identity = 78/160 (48.75%), Postives = 114/160 (71.25%), Query Frame = -2 Query: 164 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 643 +LKT TDGY+AVQ+G+G +++ + KP GH K+ P R ++E R SV+G+E GQ++ +IF G+LVDV+GT+ GKGFQG IKRH RG M HGS+ HR+ GS+G P RV+KGK +PG+MGG + I+ L++VK+D + ++++KGA+PG Sbjct: 37 QLKTVDTDGYEAVQLGFGDIKESRQNKPSKGHAAKANATPKRFIKEVRT-SVEGYEIGQEIK-ADIFAAGELVDVTGTSKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGP-VAPNRVFKGKLLPGQMGGERKTIQNLEVVKVDVERGLLLVKGAIPG 193
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PELPD (50S ribosomal protein L3 OS=Pelobacter propionicus (strain DSM 2379) GN=rplC PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38 Identity = 78/166 (46.99%), Postives = 109/166 (65.66%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 KT + DGY AVQ+G+ +KP LGH KSG R+L+EF+ + G L E+ F GD VDV+GT+IGKGFQG IKR+NFR G +HGS+ HR GSIGA TP RV+K KKMPG++G T ++ L+++++D D +++IKGA+PG N++ + Sbjct: 39 KTASIDGYSAVQVGFDSTPAANASKPMLGHCTKSGQGVFRYLREFKFDAASEMNLGDVLTVEQ-FTAGDFVDVTGTSIGKGFQGVIKRYNFRGGRASHGSRFHRAPGSIGASATPSRVFKNKKMPGQLGNTQVTMQCLQVIRVDADDNLLLIKGAIPGHRNNIVLI 203 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |