DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOSW (50S ribosomal protein L3 OS=Geobacillus sp. (strain WCH70) GN=rplC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38
Identity = 80/169 (47.34%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT   DGY+A+Q+G+  + +K+  KP++GH  K+   P R ++E R  ++D +E GQ++  + IF EGD+VDV+G + GKGFQG IKRH   RG M HGS+ HR+ GS+GA   P RV+K K++PGRMGG    I+ LKIVK+D +  +++IKG VPG    L+ V  A
Sbjct:   39 KTIEKDGYEAIQLGFEDISEKRANKPQIGHAAKANTAPKRFIREIRGANIDEYEVGQEVKVD-IFAEGDIVDVTGISKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGA-IAPNRVFKSKELPGRMGGQRVTIQNLKIVKVDPERNLLLIKGNVPGPRKGLVIVKSA 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYMTH (50S ribosomal protein L3 OS=Symbiobacterium thermophilum GN=rplC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 79/166 (47.59%), Postives = 113/166 (68.07%), Query Frame = -2
Query:  140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637
            KT ATDGY+AVQ+G+G +R+  + KP  GH +K  +   R+L+EFRL  V+    G  +   +IF EG+LVDV+G + GKGF GG+KR NF RG  +HGSK HR+ GS+G      RV KG+K+PGR+GG    +  L++VK+D +  +++IKGAVPG  G+L+ +
Sbjct:   39 KTTATDGYNAVQLGFGEIRETLVNKPLKGHFEKHQVKATRYLREFRLDDVESLNVGDVIK-ADIFAEGELVDVTGISRGKGFAGGVKRWNFNRGPSSHGSKYHRRPGSLGQRRW-ARVPKGRKLPGRLGGERVTVLGLRVVKVDPEKNLILIKGAVPGAKGSLITI 202          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CHLSY (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 81/172 (47.09%), Postives = 114/172 (66.28%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T   DGY AVQ+GY  V  +KLTKP+ GHL+ SG   +R+L+EF          G+ +  E +F  G  VD+SGT+ G+GF G +KRH FR G  THG S  HR  GSIGAGTTPGRV+KG++M GRMGGT   I+ L++V++  +  ++++KG+VPG    LL++  A
Sbjct:   37 QIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVE-LFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKGQRMAGRMGGTRVTIQNLEVVEVLPEQNLLLVKGSVPGARNGLLQIRKA 207          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CHLAA (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 81/172 (47.09%), Postives = 114/172 (66.28%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            +++T   DGY AVQ+GY  V  +KLTKP+ GHL+ SG   +R+L+EF          G+ +  E +F  G  VD+SGT+ G+GF G +KRH FR G  THG S  HR  GSIGAGTTPGRV+KG++M GRMGGT   I+ L++V++  +  ++++KG+VPG    LL++  A
Sbjct:   37 QIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVE-LFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKGQRMAGRMGGTRVTIQNLEVVEVLPEQNLLLVKGSVPGARNGLLQIRKA 207          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BRAPL (50S ribosomal protein L3 OS=Brachyspira pilosicoli GN=rplC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 78/181 (43.09%), Postives = 117/181 (64.64%), Query Frame = -2
Query:  101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643
            +++    DGY+A+Q+GYG V++K L KP++G  +K+ L P ++L+EFRL     +  GQ+L  + IF  GD +DVS  + G+GF G +KRHN+  G M+HGS   R+ GSIG  + P RV+KGK MPG MG T   I+ LK+V+I  +  ++MIKG++PG    ++++  A    KN  KN
Sbjct:   36 QVRDNEKDGYNAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRLDDSSAYTVGQELKVD-IFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRAGSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPEDNLIMIKGSIPGAINGIVKITQA-AKKKNKKKN 214          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_MOOTA (50S ribosomal protein L3 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 75/166 (45.18%), Postives = 117/166 (70.48%), Query Frame = -2
Query:  146 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 643
            R K  +TDGYDAVQ+G+  V+++K+ KP LG+  K+G+ P R+++EFRL++   ++ GQ++   ++F+ G+ VDV+G + GKGF GGIKRH F RG M HGSK HR+ GS+ A   P RV+KG+++PG +G     ++ L++V+ D +  +++IKG+VPG    LL
Sbjct:   37 RKKETSTDGYDAVQVGFEPVKERKVNKPLLGYFNKAGVTPFRYIREFRLENSGEYQVGQEIK-ADVFSPGEKVDVTGISKGKGFAGGIKRHGFHRGPMEHGSKYHRRPGSL-AAKGPARVFKGRRLPGHLGAVRVTVQGLEVVRNDPERNLLLIKGSVPGPRHGLL 200          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_FINM2 (50S ribosomal protein L3 OS=Finegoldia magna (strain ATCC 29328) GN=rplC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 76/171 (44.44%), Postives = 115/171 (67.25%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++KT+  +GY+A+Q+GY   ++K + +P  GH  K+G+   +HL+EF++   + F  G ++  + IF +GD+VDV G + GKG QG I RHN+ RG M HGSKSHR  G+  AG+ P RV+KG+K  G+MG     ++ LKIVK+DN+  +++IKGAVPG  G ++ V  A
Sbjct:   36 QIKTKEKEGYNAIQVGYIEKKEKHVNQPMRGHFGKAGVSFKKHLREFKINDDEQFNLGDEIKLD-IFQDGDVVDVIGISKGKGTQGAIVRHNYSRGPMGHGSKSHRVAGARSAGSYPARVFKGRKGSGKMGHDRVTVQNLKIVKVDNERNLLLIKGAVPGNKGGVVTVREA 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACLD (50S ribosomal protein L3 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT   DGY+A+QIG+   R+K   KPE GH+ K+   P R ++E R   +D +E GQ++  + IF+ G++VDV+GT+ GKGFQG IKRH   RG M+HGS+ HR+ GS+G    P RV+KGK +PGRMGG    ++ L+IVK+D +  ++++KG VPG   +L+ V  A
Sbjct:   39 KTSENDGYEAIQIGFDDKREKLANKPEKGHVAKAETAPKRFVKELRGVDMDAYEVGQEVKVD-IFSNGEIVDVTGTSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGP-VDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLVKGNVPGAKKSLVTVKSA 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACST (50S ribosomal protein L3 OS=Bacillus stearothermophilus GN=rplC PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637
            KT   DGY+A+Q+G+  + +K+  KP++GH  K+   P R ++E R  +++ +E GQ++  + IF+EGD+VDV+G + GKGFQG IKRH   RG M HGS+ HR+ GS+GA   P RV+K K +PGRMGG    I+ LKIVK+D +  +++IKG VPG    L+ V  A
Sbjct:   39 KTIENDGYEAIQLGFEDISEKRANKPQIGHAAKANTAPKRFIREIRGANINEYEVGQEVKVD-IFSEGDIVDVTGISKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGA-IAPNRVFKTKNLPGRMGGERVTIQNLKIVKVDPERNLLLIKGNVPGPRKGLVIVKSA 205          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THICR (50S ribosomal protein L3 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSV---DGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++K   TDGYDA+Q+ +G     +++KPE GH  K+G+   + L EFRL  V   +G E G ++  E+ FN+  +VDVSGTT GKGFQGG+KRHNF+    THG S SHR  GSIG   TPGRV+KGKKM G MG   +    L++VK+D +  +++IKGA+PG  G+ + V  A
Sbjct:   37 QIKNNETDGYDAIQVTFGSKHAGRVSKPEAGHYAKAGVEAGQGLWEFRLDDVSEVEGLEPGSEITVEK-FNDVAVVDVSGTTKGKGFQGGVKRHNFKMQDATHGNSVSHRAPGSIGQNQTPGRVFKGKKMAGHMGNVKQTTLNLELVKVDVENSLLLIKGALPGAKGSTVIVRKA 210          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_GEOSW1.109e-3847.3450S ribosomal protein L3 OS=Geobacillus sp. (strai... [more]
RL3_SYMTH1.449e-3847.5950S ribosomal protein L3 OS=Symbiobacterium thermo... [more]
RL3_CHLSY1.449e-3847.0950S ribosomal protein L3 OS=Chloroflexus aurantiac... [more]
RL3_CHLAA1.449e-3847.0950S ribosomal protein L3 OS=Chloroflexus aurantiac... [more]
RL3_BRAPL1.892e-3843.0950S ribosomal protein L3 OS=Brachyspira pilosicoli... [more]
RL3_MOOTA2.471e-3845.1850S ribosomal protein L3 OS=Moorella thermoacetica... [more]
RL3_FINM22.471e-3844.4450S ribosomal protein L3 OS=Finegoldia magna (stra... [more]
RL3_BACLD2.471e-3846.7550S ribosomal protein L3 OS=Bacillus licheniformis... [more]
RL3_BACST3.227e-3846.7550S ribosomal protein L3 OS=Bacillus stearothermop... [more]
RL3_THICR4.215e-3848.0050S ribosomal protein L3 OS=Thiomicrospira crunoge... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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