DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GEOSW (50S ribosomal protein L3 OS=Geobacillus sp. (strain WCH70) GN=rplC PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.109e-38 Identity = 80/169 (47.34%), Postives = 114/169 (67.46%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT DGY+A+Q+G+ + +K+ KP++GH K+ P R ++E R ++D +E GQ++ + IF EGD+VDV+G + GKGFQG IKRH RG M HGS+ HR+ GS+GA P RV+K K++PGRMGG I+ LKIVK+D + +++IKG VPG L+ V A Sbjct: 39 KTIEKDGYEAIQLGFEDISEKRANKPQIGHAAKANTAPKRFIREIRGANIDEYEVGQEVKVD-IFAEGDIVDVTGISKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGA-IAPNRVFKSKELPGRMGGQRVTIQNLKIVKVDPERNLLLIKGNVPGPRKGLVIVKSA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYMTH (50S ribosomal protein L3 OS=Symbiobacterium thermophilum GN=rplC PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 79/166 (47.59%), Postives = 113/166 (68.07%), Query Frame = -2 Query: 140 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 637 KT ATDGY+AVQ+G+G +R+ + KP GH +K + R+L+EFRL V+ G + +IF EG+LVDV+G + GKGF GG+KR NF RG +HGSK HR+ GS+G RV KG+K+PGR+GG + L++VK+D + +++IKGAVPG G+L+ + Sbjct: 39 KTTATDGYNAVQLGFGEIRETLVNKPLKGHFEKHQVKATRYLREFRLDDVESLNVGDVIK-ADIFAEGELVDVTGISRGKGFAGGVKRWNFNRGPSSHGSKYHRRPGSLGQRRW-ARVPKGRKLPGRLGGERVTVLGLRVVKVDPEKNLILIKGAVPGAKGSLITI 202
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CHLSY (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplC PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 81/172 (47.09%), Postives = 114/172 (66.28%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T DGY AVQ+GY V +KLTKP+ GHL+ SG +R+L+EF G+ + E +F G VD+SGT+ G+GF G +KRH FR G THG S HR GSIGAGTTPGRV+KG++M GRMGGT I+ L++V++ + ++++KG+VPG LL++ A Sbjct: 37 QIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVE-LFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKGQRMAGRMGGTRVTIQNLEVVEVLPEQNLLLVKGSVPGARNGLLQIRKA 207
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CHLAA (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplC PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 81/172 (47.09%), Postives = 114/172 (66.28%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 +++T DGY AVQ+GY V +KLTKP+ GHL+ SG +R+L+EF G+ + E +F G VD+SGT+ G+GF G +KRH FR G THG S HR GSIGAGTTPGRV+KG++M GRMGGT I+ L++V++ + ++++KG+VPG LL++ A Sbjct: 37 QIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVE-LFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKGQRMAGRMGGTRVTIQNLEVVEVLPEQNLLLVKGSVPGARNGLLQIRKA 207
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BRAPL (50S ribosomal protein L3 OS=Brachyspira pilosicoli GN=rplC PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38 Identity = 78/181 (43.09%), Postives = 117/181 (64.64%), Query Frame = -2 Query: 101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643 +++ DGY+A+Q+GYG V++K L KP++G +K+ L P ++L+EFRL + GQ+L + IF GD +DVS + G+GF G +KRHN+ G M+HGS R+ GSIG + P RV+KGK MPG MG T I+ LK+V+I + ++MIKG++PG ++++ A KN KN Sbjct: 36 QVRDNEKDGYNAIQLGYGAVKEKHLKKPQIGQFKKANLEPKKYLKEFRLDDSSAYTVGQELKVD-IFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRAGSIGCNSYPARVWKGKGMPGHMGNTLTTIQNLKVVEIRPEDNLIMIKGSIPGAINGIVKITQA-AKKKNKKKN 214
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_MOOTA (50S ribosomal protein L3 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplC PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38 Identity = 75/166 (45.18%), Postives = 117/166 (70.48%), Query Frame = -2 Query: 146 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 643 R K +TDGYDAVQ+G+ V+++K+ KP LG+ K+G+ P R+++EFRL++ ++ GQ++ ++F+ G+ VDV+G + GKGF GGIKRH F RG M HGSK HR+ GS+ A P RV+KG+++PG +G ++ L++V+ D + +++IKG+VPG LL Sbjct: 37 RKKETSTDGYDAVQVGFEPVKERKVNKPLLGYFNKAGVTPFRYIREFRLENSGEYQVGQEIK-ADVFSPGEKVDVTGISKGKGFAGGIKRHGFHRGPMEHGSKYHRRPGSL-AAKGPARVFKGRRLPGHLGAVRVTVQGLEVVRNDPERNLLLIKGSVPGPRHGLL 200
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_FINM2 (50S ribosomal protein L3 OS=Finegoldia magna (strain ATCC 29328) GN=rplC PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38 Identity = 76/171 (44.44%), Postives = 115/171 (67.25%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++KT+ +GY+A+Q+GY ++K + +P GH K+G+ +HL+EF++ + F G ++ + IF +GD+VDV G + GKG QG I RHN+ RG M HGSKSHR G+ AG+ P RV+KG+K G+MG ++ LKIVK+DN+ +++IKGAVPG G ++ V A Sbjct: 36 QIKTKEKEGYNAIQVGYIEKKEKHVNQPMRGHFGKAGVSFKKHLREFKINDDEQFNLGDEIKLD-IFQDGDVVDVIGISKGKGTQGAIVRHNYSRGPMGHGSKSHRVAGARSAGSYPARVFKGRKGSGKMGHDRVTVQNLKIVKVDNERNLLLIKGAVPGNKGGVVTVREA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACLD (50S ribosomal protein L3 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplC PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38 Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT DGY+A+QIG+ R+K KPE GH+ K+ P R ++E R +D +E GQ++ + IF+ G++VDV+GT+ GKGFQG IKRH RG M+HGS+ HR+ GS+G P RV+KGK +PGRMGG ++ L+IVK+D + ++++KG VPG +L+ V A Sbjct: 39 KTSENDGYEAIQIGFDDKREKLANKPEKGHVAKAETAPKRFVKELRGVDMDAYEVGQEVKVD-IFSNGEIVDVTGTSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGP-VDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLVKGNVPGAKKSLVTVKSA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_BACST (50S ribosomal protein L3 OS=Bacillus stearothermophilus GN=rplC PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38 Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = -2 Query: 131 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 637 KT DGY+A+Q+G+ + +K+ KP++GH K+ P R ++E R +++ +E GQ++ + IF+EGD+VDV+G + GKGFQG IKRH RG M HGS+ HR+ GS+GA P RV+K K +PGRMGG I+ LKIVK+D + +++IKG VPG L+ V A Sbjct: 39 KTIENDGYEAIQLGFEDISEKRANKPQIGHAAKANTAPKRFIREIRGANINEYEVGQEVKVD-IFSEGDIVDVTGISKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGA-IAPNRVFKTKNLPGRMGGERVTIQNLKIVKVDPERNLLLIKGNVPGPRKGLVIVKSA 205
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THICR (50S ribosomal protein L3 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplC PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38 Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSV---DGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++K TDGYDA+Q+ +G +++KPE GH K+G+ + L EFRL V +G E G ++ E+ FN+ +VDVSGTT GKGFQGG+KRHNF+ THG S SHR GSIG TPGRV+KGKKM G MG + L++VK+D + +++IKGA+PG G+ + V A Sbjct: 37 QIKNNETDGYDAIQVTFGSKHAGRVSKPEAGHYAKAGVEAGQGLWEFRLDDVSEVEGLEPGSEITVEK-FNDVAVVDVSGTTKGKGFQGGVKRHNFKMQDATHGNSVSHRAPGSIGQNQTPGRVFKGKKMAGHMGNVKQTTLNLELVKVDVENSLLLIKGALPGAKGSTVIVRKA 210 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |