CN184895

Overview
NameCN184895
Unique NameCN184895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = -2
Query:  249 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGT 494
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  CS+C YPAA+ R YNW  KA RR TTGTGRMRYL+HV RRFK+ F+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.975e-30
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = -2
Query:  240 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAA 494
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  CS+C YP+A+ R +NW+ KA RR TTGTGRMRYL+HV RRFK+ F+ G+  A
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSAKA 85          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.725e-29
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = -2
Query:  234 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPR 494
            M KGT SFGKR NKTHTLC RCGRRS+HIQKS C+ C YPAA+ RKYNWS KA RRKTTG+GR  +LR V RRFK+ F+ GT    R
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGTPKGAR 87          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = -2
Query:  240 KGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAA 488
            +GT S GKR NK+HTLC RCGRRSFH+QK  CS+C YPAA++R +NW++KA RR+TTGTGRM YL+HV RRFK+ F+ G   A
Sbjct:    1 EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTGVAKA 83          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  252 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREG 494
            M KGT SFGKR NK+HT C RCGR+S+HIQK  CS+C YP+AR+RKYNWS KA RR+TTGTGRM +L+ V RRFK  FR G
Sbjct:    1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = -2
Query:  210 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 494
            M KGT SFG R NK+HT+C RCG+RSFHIQKS C+ C YPAA+ R YNW  KA RR+TTGTGRM YL+ V R FK+ FR G  AA     VAAS+
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPAAA----VAASA 91          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.565e-27
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  252 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREG 494
            M KGT S GKR NK+H LC RCG+RSFH+QK  C++C YPAA++R +NW+ KA RR+TTGTGRM YL+HV RRFK+ F+ G
Sbjct:    1 MSKGTPSLGKRHNKSHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = -2
Query:  210 RCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKNVAASS 398
            RCSACAYPAAR+RKYNWSVKA+RRKTTGTGRMRYLR+VPRRFK+NFREGTEAAPRKK  AA+S
Sbjct:    2 RCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGTAAAS 64          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  252 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREG 494
            M KGT SFG R NK+HT+C RCG+RSFHIQKS C+ C YPAA+ R YNW  KA RR+TTGTGRM YL+ V R FK+ FR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  225 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPRKKN 494
            M KGT SFGKR NKTHT+C RCG  S+H+QKS+CS C YPAA+ R +NWS KA  RK  GTGRMRYL+++ RRF++  REG  AA +K N
Sbjct:    1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG-GAAKKKTN 89          
The following BLAST results are available for this feature:
BLAST of CN184895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL37A_YEAST5.197e-3171.9560S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37B_YEAST1.975e-3068.2460S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_EMENI3.725e-2968.9760S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37_CANAL4.118e-2865.0660S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37_SCHMA5.378e-2869.1460S ribosomal protein L37 OS=Schistosoma mansoni G... [more]
RL37B_SCHPO5.378e-2863.1660S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37_DEBHA1.565e-2764.2060S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37_SOLLC4.553e-2788.8960S ribosomal protein L37 (Fragment) OS=Solanum ly... [more]
RL37A_SCHPO4.553e-2766.6760S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL372_DROME1.014e-2662.22Probable 60S ribosomal protein L37-B OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184895 ID=CN184895; Name=CN184895; organism=Citrus sinensis; type=EST; length=786bp
GAGGTTTTAATCAAAAACAAGGATCTATGATATTGATTTACCTTAGAATA
ATAAAAGAGAGGATTAAAAAATGAATTCAGTAAAAATAATAACTCTCCAA
TATTTAAAACTTGCGAATGATAATAAGTAACACTTTGTGAACCAAAATTC
TTGTTTGCAAACATACAAATAACAAGATAAAACAGACTATCATTTCCTTC
ATAAGCTTAAGAAGATGCAGCCACATTCTTCTTCCTTGGAGCTGCTTCAG
TACCTTCTCTGAAGTTACTCTTGAACCTGCGTGGCACATGACGAAGGTAC
CTCATGCGTCCGGTTCCAGTGGTCTTTCGGCGGATGGCCTTCACACTCCA
GTTATATTTTCTAACACGGGCAGCGGGATAAGCGCAAGCGCTGCATCGGC
TCTTCTGGATGTGGAAACTCCTGCGACCGCATCTCACGCACAGTGTGTGA
GTCTTGTTCCTTCTCTTACCAAAGCTTCCGGTTCCTTTCCCCATTTCTTC
TTCGGTTGCGGAAACAAATTAAAAAAAATAAAAATTCCTAGACCCTAATC
TGCTTTGTTCCAATTATAAGAGAATCGCTCTCAGACATATATATGTAGCT
GATTGCTGATAGCAGCATACCATCCCATTAGAAATTAACAGAAAATATAA
AAGAAGAAGAAGAAGAAGGGGAAAAAAAAAAAGGATAGATGATCACTATA
CTGTTGTAGTTGTGGCAGCACCAGTTGCATTTCCACTAGCCTCACCGGCC
CCGGCACCGGAACTAGTGCCACTAGATTGACCACTA
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