CN184895

Overview
NameCN184895
Unique NameCN184895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184895_ssr651 microsatellite CN184895_ssr651:651..668. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = -2
Query:  234 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPR 494
            M KGT SFG+R  K+HTLC RCG+ SFHIQK  C++C YP+A+ R YNWS+KA RRKTTGTGR RYL+ V +RF S F+E + A  +
Sbjct:    1 MTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEASLAVKK 87          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_CAEEL (60S ribosomal protein L37 OS=Caenorhabditis elegans GN=rpl-37 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.762e-24
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = -2
Query:  234 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFREGTEAAPR 494
            M KGT +FGK+  K+HTLC RCG+ SFHIQK RC++C Y  A+ R YNW  K+IRR+TTGTGR R+LR V  RF++ FR GT   PR
Sbjct:    1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFR-GTTPKPR 86          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_LEIIN (60S ribosomal protein L37 OS=Leishmania infantum GN=RPL37 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.209e-23
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = -2
Query:  258 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFR 494
            M KGT S G+R  +TH LC RCGR S+H+Q  RC+ACAYP A  R+YNWSVKAI+R+ TGTGR RYL+ V RR  ++F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_LEIDO (60S ribosomal protein L37 OS=Leishmania donovani GN=RPL37 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.209e-23
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = -2
Query:  258 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFR 494
            M KGT S G+R  +TH LC RCGR S+H+Q  RC+ACAYP A  R+YNWSVKAI+R+ TGTGR RYL+ V RR  ++F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_ENCCU (60S ribosomal protein L37 OS=Encephalitozoon cuniculi GN=RPL37 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = -2
Query:  258 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSNFR 494
            M KGT SFGK+  +   +C RCGR+S+H QK+ CS+C YP  ++R    S+KA RR+T GTGRMRY++   R  K+  +
Sbjct:    1 MSKGTASFGKKNKRNTEMCRRCGRQSYHKQKNSCSSCGYPNPKMRNPG-SIKARRRRTIGTGRMRYMKRELRAAKNGHK 78          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_METKA (50S ribosomal protein L37e OS=Methanopyrus kandleri GN=rpl37e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = -2
Query:  324 MGKGTGSFGKR-RNKTHTLCVRCGRRSFHIQKSRCSACAY-PAARVRKYNWSVKAIRRK 494
            M KGT SFGKR + KTH  C RCGRR++H++K  C+AC +  + R+R+Y+W  K + RK
Sbjct:    1 MAKGTPSFGKRNKTKTHVRCRRCGRRAYHVRKGYCAACGFGRSRRIRRYSWQNKKVNRK 59          
BLAST of CN184895 vs. ExPASy Swiss-Prot
Match: RL37_METJA (50S ribosomal protein L37e OS=Methanocaldococcus jannaschii GN=rpl37e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = -2
Query:  324 MGKGTGSFGKR-RNKTHTLCVRCGRRSFHIQKSRCSACAYPAARVRKYNWSVKAIRRK 494
            M KGT S GKR +   H  C RCGRR++H++K RC+AC +P  R+RKY+W  K +  K
Sbjct:    1 MSKGTPSMGKRNKGSYHIRCRRCGRRAYHVRKKRCAACGFPNKRMRKYSWQNKKVNGK 58          
The following BLAST results are available for this feature:
BLAST of CN184895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL37_DICDI1.325e-2660.9260S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_CAEEL2.762e-2459.7760S ribosomal protein L37 OS=Caenorhabditis elegan... [more]
RL37_LEIIN5.209e-2360.7660S ribosomal protein L37 OS=Leishmania infantum G... [more]
RL37_LEIDO5.209e-2360.7660S ribosomal protein L37 OS=Leishmania donovani G... [more]
RL37_ENCCU3.061e-1548.1060S ribosomal protein L37 OS=Encephalitozoon cunic... [more]
RL37_METKA4.574e-1150.8550S ribosomal protein L37e OS=Methanopyrus kandler... [more]
RL37_METJA4.574e-1150.0050S ribosomal protein L37e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184895 ID=CN184895; Name=CN184895; organism=Citrus sinensis; type=EST; length=786bp
GAGGTTTTAATCAAAAACAAGGATCTATGATATTGATTTACCTTAGAATA
ATAAAAGAGAGGATTAAAAAATGAATTCAGTAAAAATAATAACTCTCCAA
TATTTAAAACTTGCGAATGATAATAAGTAACACTTTGTGAACCAAAATTC
TTGTTTGCAAACATACAAATAACAAGATAAAACAGACTATCATTTCCTTC
ATAAGCTTAAGAAGATGCAGCCACATTCTTCTTCCTTGGAGCTGCTTCAG
TACCTTCTCTGAAGTTACTCTTGAACCTGCGTGGCACATGACGAAGGTAC
CTCATGCGTCCGGTTCCAGTGGTCTTTCGGCGGATGGCCTTCACACTCCA
GTTATATTTTCTAACACGGGCAGCGGGATAAGCGCAAGCGCTGCATCGGC
TCTTCTGGATGTGGAAACTCCTGCGACCGCATCTCACGCACAGTGTGTGA
GTCTTGTTCCTTCTCTTACCAAAGCTTCCGGTTCCTTTCCCCATTTCTTC
TTCGGTTGCGGAAACAAATTAAAAAAAATAAAAATTCCTAGACCCTAATC
TGCTTTGTTCCAATTATAAGAGAATCGCTCTCAGACATATATATGTAGCT
GATTGCTGATAGCAGCATACCATCCCATTAGAAATTAACAGAAAATATAA
AAGAAGAAGAAGAAGAAGGGGAAAAAAAAAAAGGATAGATGATCACTATA
CTGTTGTAGTTGTGGCAGCACCAGTTGCATTTCCACTAGCCTCACCGGCC
CCGGCACCGGAACTAGTGCCACTAGATTGACCACTA
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