CN184883

Overview
NameCN184883
Unique NameCN184883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.810e-55
Identity = 118/239 (49.37%), Postives = 151/239 (63.18%), Query Frame = 3
Query:    9 QRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L +A EG+  GQ +Y G +A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG IAARRTGR
Sbjct:    8 QRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHIAARRTGR 237          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.793e-55
Identity = 118/239 (49.37%), Postives = 151/239 (63.18%), Query Frame = 3
Query:    9 QRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L IA EG+  GQ +Y G +A + +GN LP+  IPEG  V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG IAARRTGR
Sbjct:    8 QRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHIAARRTGR 237          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.175e-55
Identity = 117/239 (48.95%), Postives = 151/239 (63.18%), Query Frame = 3
Query:    9 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            QR+G GS  F+S +H  +G  ++  L++ + +  L+GVV EI+HDPGR AP+ARV F +       ++L IA EG+  GQ +Y G  A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG IAARRTGR
Sbjct:    8 QRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTLRGVVEEIMHDPGRTAPVARVRFENGM-----EKLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHIAARRTGR 237          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.379e-54
Identity = 115/239 (48.12%), Postives = 151/239 (63.18%), Query Frame = 3
Query:    9 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            QR+G GS  F+S +H  +G  ++  L++ + +  ++GVV EI+HDPGR AP+ARV F +       ++L IA EG+  GQ +Y G  A + +GN LP+  IPEG  + N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG IAARRTGR
Sbjct:    8 QRRGKGSPTFRSPSHRFRGAVKYIPLNYTQ-DKTIRGVVEEIMHDPGRTAPVARVKFENGM-----EKLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHIAARRTGR 237          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.379e-54
Identity = 115/241 (47.72%), Postives = 147/241 (61.00%), Query Frame = 3
Query:    3 RAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            + QR+G G S F++ +H  K     +     E    L G V ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG IA++RTGR
Sbjct:    6 QGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTGR 236          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.379e-54
Identity = 115/241 (47.72%), Postives = 147/241 (61.00%), Query Frame = 3
Query:    3 RAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            + QR+G G S F++ +H  K     +     E    L G V ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RDA PG+KVG IA++RTGR
Sbjct:    6 QGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTGR 236          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.106e-54
Identity = 119/248 (47.98%), Postives = 155/248 (62.50%), Query Frame = 3
Query:    3 RAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAA 743
            R QR G G+  +++  H R  P ++ S +  + +   +G V E+ HDPGR  PLA +   +   +        AAEGMYTGQ V  G  A  + GN+LP+ +IPEG  + NVE   GD G LAR+ G YA+++  +   ++  ++LPSG  K + +  RA IG  AG GR EKPLLKAGNAY+K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG IAAR TGR   QA A
Sbjct:    6 RVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHIAARCTGRGCKQAKA 246          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.057e-54
Identity = 113/241 (46.89%), Postives = 150/241 (62.24%), Query Frame = 3
Query:    9 QRKGAGSVFKSHTHHR-KGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLR 728
            QR+G G+       HR K   ++RS D  E+ G +KG+V +I+HDP R AP+A V F +      +K+  +A E +     + CG  A +  GN LP+  IPEG  + ++E+  GD G   R+SG YA +I+H  D + + V+LPSG  K +   CRA IG VAGGGR EKP LKAGN +H ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG IAA+RTG  R
Sbjct:    8 QRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAAKRTGLKR 241          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.299e-54
Identity = 112/241 (46.47%), Postives = 144/241 (59.75%), Query Frame = 3
Query:    3 RAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            R QR G G   +++ +H  +G  + R  D  E+ G + G V E++HDP R AP+ARV F        ++ L +  EG   G  + CG  A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H  D   T V+LPSG  +     CRA IG ++GGG+ EKP +KAG  Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG IAAR+TGR
Sbjct:    6 RPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHIAARKTGR 239          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.180e-53
Identity = 111/240 (46.25%), Postives = 151/240 (62.92%), Query Frame = 3
Query:    6 AQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 722
            +Q +G G+  +++ +H  +  A  + + F      ++G+V +I+HDP R AP+A V   +      +K+  +A EG Y GQ + CG  A +  GN LP+ SIPEG  +CN+E   G  G  ARASG Y ++++H  D   T V+LPSG  K +   C A IG VAGGGRTEKPL+KAG +++K+R K   WP+VRGVAMN V+HP GGG  QH G   TV R  PPG+KVG IAARRTG+
Sbjct:    7 SQNRGKGTPTYRAPSHRYR--ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSIAARRTGK 235          
The following BLAST results are available for this feature:
BLAST of CN184883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THEGJ2.810e-5549.3750S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_PYRKO4.793e-5549.3750S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_PYRAB8.175e-5548.9550S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_PYRHO2.379e-5448.1250S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_HALSA2.379e-5447.7250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS32.379e-5447.7250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_IGNH43.106e-5447.9850S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_METS34.057e-5446.8950S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_METKA5.299e-5446.4750S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_METTP1.180e-5346.2550S ribosomal protein L2P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184883 ID=CN184883; Name=CN184883; organism=Citrus sinensis; type=EST; length=750bp
TTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCAC
CACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAA
TGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTG
GTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAA
CAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCAGTTCGT
GTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTA
GATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGT
GATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAG
TCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCA
AAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGC
GGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAA
ATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGA
ACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTCAT
GCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTTAT
TGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGCAG
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