CN184883

Overview
NameCN184883
Unique NameCN184883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 3
Query:    9 QRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 629
            + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:   52 RHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 3
Query:    9 QRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 629
            + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG N +   R      P VRGV MNPV+HPHGGG
Sbjct:   52 RHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIR------PTVRGVVMNPVDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_MARMS (50S ribosomal protein L2 OS=Marinomonas sp. (strain MWYL1) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 3
Query:   72 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRL 725
            +R +DF      +  VV  + +DP R A +A + +        ++   IA++GM  G  V+ G  A +  GN LP+++IP G+ V  VE   G    +AR++G  A +++      T R++  SG  + + + CRA +G+V+    + + L KAG         R   P VRG AMNPV+HPHGGG  +  G    V     P +     + +RT +L
Sbjct:   62 YRMVDFRRNKDGISAVVERLEYDPNRSANIALIRYADG-----ERRYIIASKGMVAGNIVFSGADAPIKAGNTLPLQNIPVGSTVHCVELKPGKGAQVARSAGASAQLVAREGRYVTLRLR--SGEMRKVLTECRATLGEVSNSEHSLRVLGKAGATRW-----RGVRPTVRGAAMNPVDHPHGGGEGRSKGGRHPVTPWGVPTKGYKTRSNKRTDKL 267          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_GEOSW (50S ribosomal protein L2 OS=Geobacillus sp. (strain WCH70) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 72/213 (33.80%), Postives = 103/213 (48.36%), Query Frame = 3
Query:    9 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 629
            ++ G  +  K    H+ G    Q+R +DF      + G VA I +DP R A +A + +        +K   IA + +  G  +  G  A + VGN LP+ +IP G  V N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G+V   G  +  L+K G A       R  W    P VRG  MNPV+HPHGGG
Sbjct:   39 KKAGRNNQGKITVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALIHYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKVGNALPLENIPVGTFVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIVRLASGEVRMILGACRATVGEV---GNEQHELVKIGKA------GRARWLGIRPTVRGSVMNPVDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 71/201 (35.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   72 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 662
            +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++HPHGGG  +  G  + V
Sbjct:   62 YRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDHPHGGGEGKTSGGRNPV 246          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_CHLAD (50S ribosomal protein L2 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 70/209 (33.49%), Postives = 106/209 (50.72%), Query Frame = 3
Query:    9 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 629
            ++ G  +  +    HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL RA+G  A +++   + D   +++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGGG
Sbjct:   39 KKAGRNNQGRITVRHRGGGHKRFYRIIDFKRDKFGIPAKVQAIEYDPNRSARIALLAYVDG-----EKRYIIAPLGLKVGDTVMSGPNAEIRVGNALPLGAIPLGTQIHNIELEIGRGGVLVRAAGTAAQLMA--KEGDYATIRMPSGEVRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_CELJU (50S ribosomal protein L2 OS=Cellvibrio japonicus (strain Ueda107) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 73/219 (33.33%), Postives = 108/219 (49.32%), Query Frame = 3
Query:    3 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEHPHGGGNHQHIG 647
            +++  G  +  +  T H  G     +R +DF      +   V  I +DP R A +A V +        ++   IA +G+  G  +  G  A + VGN LPVR+IP G+V+  VE   G    LAR++G  A +++   D     ++L SG  + + S CRA +G+V+      + L KAG        KR     P VRGVAMNPV+HPHGGG  +  G
Sbjct:   37 KSKSGGRNNTGRITTRHVGGGHKQHYRIVDFRRNKDGIPATVERIEYDPNRTAYIALVVYADG-----ERRYIIAPKGLSAGDKIESGNAAAIKVGNTLPVRNIPLGSVIHCVELKPGKGAQLARSAGASAQLVA--KDGAYVTLRLRSGEMRKVLSDCRATLGEVSNTEHNLRSLGKAG-------AKRWLGIRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 74/216 (34.26%), Postives = 101/216 (46.76%), Query Frame = 3
Query:    3 RAQRKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 629
            +A R   G +   H    H RK    +R +DF      + G VA I +DP R A +A + +        +K   IA   +  G  +  G  A + +GN LP+  IP G  + N+E   G  G L RA+G  A ++    D +   V+L SG  + I + CRA IGQV   G  +  LL  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:   40 KAGRNNQGRITVRHQGGGHKRK----YRIIDFKRNKDGIIGRVATIEYDPNRSANIALINYADG-----EKRYIIAPHNLKVGDQIVSGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR--DGEFVIVRLSSGETRRIHNVCRATIGQV---GNLDHELLNIGKA------GRSRWLGIRPTVRGSVMNPNDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_BACP2 (50S ribosomal protein L2 OS=Bacillus pumilus (strain SAFR-032) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 70/191 (36.65%), Postives = 97/191 (50.79%), Query Frame = 3
Query:   69 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 629
            Q+R +DF      + G VA I +DP R A +A V +        +K   +A +G+  G  V  G +A +  GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGGG
Sbjct:   61 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVNYADG-----EKRYILAPKGIQVGTEVTSGPEADIKPGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDHPHGGG 235          
BLAST of CN184883 vs. ExPASy Swiss-Prot
Match: RL2_ACIBY (50S ribosomal protein L2 OS=Acinetobacter baumannii (strain AYE) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   72 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQK 689
            +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     ++L SG  + +   CRA+IG+V+      + L KAG A       R   P VRG+AMNP++HPHGGG  ++ G    ++  +P GQK
Sbjct:   62 YRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGR--DGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARW-----RGVRPTVRGMAMNPIDHPHGGGEGRNKG----IQPVSPWGQK 251          
The following BLAST results are available for this feature:
BLAST of CN184883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIMF2.654e-2133.6550S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIMA2.654e-2133.6550S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_MARMS2.654e-2131.1950S ribosomal protein L2 OS=Marinomonas sp. (strai... [more]
RL2_GEOSW2.654e-2133.8050S ribosomal protein L2 OS=Geobacillus sp. (strai... [more]
RL2_EHRCR2.654e-2135.3250S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]
RL2_CHLAD2.654e-2133.4950S ribosomal protein L2 OS=Chloroflexus aggregans... [more]
RL2_CELJU2.654e-2133.3350S ribosomal protein L2 OS=Cellvibrio japonicus (... [more]
RL2_BREBN2.654e-2134.2650S ribosomal protein L2 OS=Brevibacillus brevis (... [more]
RL2_BACP22.654e-2136.6550S ribosomal protein L2 OS=Bacillus pumilus (stra... [more]
RL2_ACIBY2.654e-2133.0150S ribosomal protein L2 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184883 ID=CN184883; Name=CN184883; organism=Citrus sinensis; type=EST; length=750bp
TTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCAC
CACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAA
TGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTG
GTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAA
CAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCAGTTCGT
GTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTA
GATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGT
GATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAG
TCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCA
AAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGC
GGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAA
ATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGA
ACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTCAT
GCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTTAT
TGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGCAG
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