CN184877

Overview
NameCN184877
Unique NameCN184877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.427e-34
Identity = 74/143 (51.75%), Postives = 95/143 (66.43%), Query Frame = 1
Query:   10 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV+ +   + G K +  +  ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFK-GDIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPSADAPMFVMGVNNETYTKDI 143          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 7.088e-34
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   10 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.088e-34
Identity = 74/142 (52.11%), Postives = 95/142 (66.90%), Query Frame = 1
Query:   13 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            ++GINGFGRIGR+V R  L   +V++VA+NDPFI  +YM YMFKYDSVHG+++   ++ KD K ++ G K ++VF  R+P +IPW    A YVVESTGVFT               VIISAPS DAPMFV GVN  +Y  +L
Sbjct:    4 QVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQ-GTVEAKDGKLVVNG-KEISVFSERDPAQIPWGSVEAAYVVESTGVFTSIDAASAHLQGGAKKVIISAPSGDAPMFVCGVNLEKYTSDL 143          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   10 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 426
            VK+GINGFGRIGR+V R  L   +V +VAVNDPFI  +YM YMFKYDSVHG++K   ++ K  K ++ G K ++VFG ++   IPW+  GAEY+VESTGVFT               VIISAPS DAPM+V GVN   Y
Sbjct:    3 VKVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFK-GTVETKGGKLIVDG-KEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEKASAHLKGGAKKVIISAPSADAPMYVCGVNLDSY 139          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   10 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTL 142          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.258e-34
Identity = 71/140 (50.71%), Postives = 95/140 (67.86%), Query Frame = 1
Query:   13 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 432
            K+GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDS HG++    +++KD K ++ G   + V   R+P +I W+ +GA+YV+ESTGVFT               VIISAPSKDAPM+VVGVNE ++ P
Sbjct:    5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDG-SVEIKDGKLVIDGNA-IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNP 142          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 68/143 (47.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   10 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            + +GINGFGRIGRLV R+ L R D+++VA+NDPFI  +Y +YMFKYDS HG++   E+  + +  ++ G+K + V+  R+P  IPW + G +YV++STGVF                V+I+APS  APMFVVGVNE +Y P+L
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS-GEVSHEGENIVIDGKK-IRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPDL 143          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   16 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 432
            +GINGFGRIGRLV R  LQ+  +++VA+NDPFI   YM YMFKYDS HG++K  E+ ++D K L+  +  ++VF    P EIPW + GA+YVVESTGVF                V++SAPS DAPMFV+GVNE ++ P
Sbjct:    6 VGINGFGRIGRLVLRACLQKG-IKVVAINDPFIDLQYMVYMFKYDSTHGRYK-GEVSMEDGK-LIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKFDP 141          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   13 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 438
            K+GINGFGRIGR+V R  ++ + V++VAVNDPFI   Y  YM KYDS HG++  +     D  TL+   K +  +  R+P +IPW+ETGAEYVVESTGVFT               VIISAPS D+PMFV+GVN  +Y  ++
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRF--NGTVEFDGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSSDSPMFVMGVNNDQYTKDI 144          
BLAST of CN184877 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.209e-33
Identity = 76/147 (51.70%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    7 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 426
            K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:    3 KPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
The following BLAST results are available for this feature:
BLAST of CN184877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
G3P_PHANO5.427e-3451.75Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_PIG7.088e-3451.05Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P2_RHIRA7.088e-3452.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_LENED9.258e-3453.96Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_BOVIN9.258e-3451.05Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_SCHPO9.258e-3450.71Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PICCI1.209e-3347.55Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ONCMY1.209e-3351.80Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_MONAN1.209e-3350.00Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P3_CAEEL1.209e-3351.70Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184877 ID=CN184877; Name=CN184877; organism=Citrus sinensis; type=EST; length=438bp
GAGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCT
GGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTA
ATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAAGTACGAC
AGTGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAA
GACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACC
CAGAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCG
ACTGGAGTCTTTACAGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGG
TGCTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTG
TTGTGGGTGTCAATGAGCACGAGTACAAACCAGAGCTC
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