CN184875

Overview
NameCN184875
Unique NameCN184875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 8.135e-46
Identity = 94/168 (55.95%), Postives = 116/168 (69.05%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKG G + GK L++KG  FHRII  FMIQ           GESI+GE F DENF  KH   G+LSMANAGP+TNGSQFFITTV T  LDG+HVVFG+V+ G+ V R +E       +P    VI+  GE+
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 182.57 bits (462), Expect = 2.367e-45
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKGIG + GK L++KG  FHRII  FMIQ           GESI+GE F DENF  KH   G+LSMANAG +TNGSQFFITTV T  LDG+HVVFG+V+ GM V + +E    +  +P    VI+  GE+
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 4.038e-45
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKGIG + GK L++KG  FHRII  FMIQ           GESI+GE F DENF  KH   G+LSMANAG +TNGSQFFITTV T  LDG+HVVFG+V+ G+ V R +E    +  +P    VI+  GE+
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.273e-45
Identity = 95/175 (54.29%), Postives = 114/175 (65.14%), Query Frame = -1
Query:  271 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 795
            E+ EK   +V+FDI +GG   GRIVM L    VPKT ENFR LCT E+G G       YKG SFHR+IP FM Q           G+SI+G+ F DENF LKH   G LSMAN+G +TNGSQFFI T  T WLD +HVVFG V+SG +VVRK+E  G +SG P  K+VI + GE+
Sbjct:  132 EKAEKRNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.418e-44
Identity = 94/169 (55.62%), Postives = 117/169 (69.23%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 771
            KV+FDI   GKP GR+V  L+   VPKT ENFRALCTGEKG  +S GK L+YKGS FHRII  FM Q           GESI+GE F DENF+L H  P +LSMANAG +TNGSQFFITTV T  L+G+HVVFG+V+ G  +VR++E  +  ++ +P    +IS+ GE+
Sbjct:    9 KVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLERCDKGENDKPVEDWIISDCGEL 177          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.464e-44
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 771
            +V+F++ +GGK IG+I   LF   VPKT ENFRALCTGEKG  ++G  L++KGSSFHR+I  FM+Q           GESI+GE F DE F   H  P +LSMANAGP+TNGSQFFITT  T  LD +HVVFGK+LSG  +VR+IE  E  +   PK  V I + GE+
Sbjct:    5 RVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 9.945e-44
Identity = 89/167 (53.29%), Postives = 112/167 (67.07%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            +V+FDI +G    GRIVM L    VP+T ENFRALCTGE+G G       Y    FHR+IP FM Q           G+SI+G  F DENF+L+H G GVLSMAN+GP+TNGSQFFI T    WLDG+HVVFG+V+ G +VV+K+E+ G +SG+ K  V+IS  GE+
Sbjct:  113 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.894e-43
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = -1
Query:  271 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFG-ESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE---AEGRQSGEPKSKVVISNSGEM 768
            V+FDI +GG+P+GRI   LF   VP+T ENFR  CTGE      G+   YKGS FHRIIP+FM Q              I+G +SFADENF LKH  PG+LSMANAGP+TNGSQFFITTV T +LDG+HVVFGKV+ GMDVV+K+E      R    P   VVI+  GEM
Sbjct:   14 VFFDITLGGEPLGRITFELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.894e-43
Identity = 94/169 (55.62%), Postives = 114/169 (67.46%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-KSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 771
            K + DI +GG+  GRIV+ L+   VPKT ENFR LCTGEKG+G  +G  L+YKG+ FHR+I  FMIQ           GESI+G  F DENF+LKH   G+LSMAN+GP+TNGSQFFITT  TS LDG+HVVFG+V  GM VVR IE     +   P   VVI + GE+
Sbjct:    5 KCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.779e-43
Identity = 97/170 (57.06%), Postives = 111/170 (65.29%), Query Frame = -1
Query:  271 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFG-ESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG---RQSGEPKSKVVISNSGEM 768
            V+FDI +GG+P+GRI   LF   VPKT ENFR  CTGE      G+   YKGS FHRIIP+FM Q              I+G +SF DENF LKH  PG+LSMANAGP+TNGSQFFITTV T +LD +HVVFGKV  GMDVV+K+EA     R    P   VVIS  GEM
Sbjct:   14 VFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
The following BLAST results are available for this feature:
BLAST of CN184875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
PPID_RAT8.135e-4655.9540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_BOVIN2.367e-4555.9540 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_HUMAN4.038e-4555.9540 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIE_DROME5.273e-4554.29Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_DEBHA3.418e-4455.62Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPID_YARLI4.464e-4454.76Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPIE_SCHMA9.945e-4453.29Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIH_NEUCR2.894e-4356.47Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
CYP40_ARATH2.894e-4355.62Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIH_GIBZE3.779e-4357.06Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184875 ID=CN184875; Name=CN184875; organism=Citrus sinensis; type=EST; length=822bp
GAGGAGTAACTGTGTTCTTACAAGCAAATGCAAGCAATTCCACTATAAAC
AATGAAAAATAATGAAACACAAACTATTCTAGGAATAACAGAGCTATTAC
CAAGCTCGAATCTGTTAAAGACCATTGCAAATTGCAATAAGGAATTAGAG
TTGTTTTTCTACAGACCATATACCAACCCGAATGGATGTGGAACAAAACA
GATAGCACAAATATAGGACAAGTTATCAATTTCCATATAAAAATTTAATA
AGGATGGTCTGTCACAAAGCCATTTCACCACTGTTAGATATAACAACTTT
ACTTTTGGGCTCCCCACTCTGCCTTCCTTCCGCTTCAATTTTGCGGACAA
CGTCCATCCCAGAGAGCACTTTGCCAAACACAACATGGCGGCCATCCAAC
CAGCTAGTTATGACAGTCGTAATGAAGAACTGTGACCCATTGGTGTCTGG
CCCAGCATTTGCCATCGACAGAACTCCTGGTCCAGTGTGCTTCAGTTTAA
AGTTCTCATCAGCAAAACTTTCCCCAAATATTGACTCTCCACCACGCCCA
TCACCAAGAGTAAAATCACCGCCCTGGATCATAAAGCTTGGAATAATCCT
GTGAAATGAGCTCCCTTTATAATAAAGTGTTTTCCCACTCTTCCCAATTC
CTTTCTCCCCTGTGCAGAGTGCTCGGAAGTTTTCTACAGTTTTAGGGACA
GCCTTCCCAAATAGGCCCATAACTATGCGACCAATGGGTTTCCCACCAAC
CTCGATATCAAAGTAAACTTTGTGGGTCACTTTTTCCAATTCCTCTCTTG
AGTTGCCTTCCTGAATGAAAGC
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