CN184875

Overview
NameCN184875
Unique NameCN184875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 9.968e-36
Identity = 82/177 (46.33%), Postives = 112/177 (63.28%), Query Frame = -1
Query:  271 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKT-LYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSG---MDVVRKIEAEGRQSGEPKSKVVISNSGEM 789
            +  +  +V+ D+ +  KPIGRI + LF    PKT ENFRALCTGE G+  + K  L+YKG+  HR++  FMIQ           G SI+G  F DE F LKH+ P +LSMAN GP++N SQFFITT      +G+HVVFG+V+ G   +DV+  +E +G+   +P +KV I NSGE+
Sbjct:    1 MSSLEKRVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGK--SKPIAKVRIFNSGEL 175          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.461e-35
Identity = 83/169 (49.11%), Postives = 107/169 (63.31%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKT-LYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 771
            +V+ DI V    IGRI + LF +  PKT ENFRALCTGE G+  + K  L+YK + FHRI+  FMIQ           G SI+G  F DE FKLKH+ P +LSMAN GP++N SQFFITT      +G+HVVFG+V+ G +VV  I+        +P +KV+ISN GE+
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.455e-34
Identity = 81/169 (47.93%), Postives = 106/169 (62.72%), Query Frame = -1
Query:  271 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFG-ESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE--AEGRQSGEPKSKVVISNSGEM 768
            V+FDI +G  P+GR+ M LF   VP+T ENFR LCTGE    ++G    YK   FHR+I  FM+Q              I+G + FADENF  KHTG G+LSMAN+GP++NG QFFIT     +LDG+HVVFG+++ G+  +RKIE  A G  +  PK  V I+  G+M
Sbjct:   13 VFFDISIGDVPVGRMKMELFSDIVPRTAENFRQLCTGE--YKRNGVPQGYKNCLFHRVIKDFMVQGGDFIKGDGTGAMCIYGGDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATG-PNNRPKLPVKITECGQM 178          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.455e-34
Identity = 86/166 (51.81%), Postives = 101/166 (60.84%), Query Frame = -1
Query:  277 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS-GMDVVRKIEAEGRQSGEPKSKVVISNSG 771
            K + DIE+ G+  GRIV+ L G  VPKTV+NF         IG   K   YKGS+FHR+I  FMIQ           G SI+G  F DENF LKH   GV+SMANAGP+TNGSQFFITTV T WLDGRHVVFGK+ +     V+ IEA G   G P     I++ G
Sbjct:   24 KAFMDIEIDGESAGRIVLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIG 176          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.660e-31
Identity = 66/166 (39.76%), Postives = 99/166 (59.64%), Query Frame = -1
Query:  271 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 768
            V+ DI +   PIGR++  L+    PKT +NF+ LCTG+ G  +SG  L+Y GS FHR++ +  +Q           GESI+G +F DENF + H   GVL M N G  +NGSQF+IT     +LD ++V FG+++ G DV+  +E+   ++  P    VI+ SG++
Sbjct:  140 VFLDISIDLYPIGRLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.261e-30
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = -1
Query:  274 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 768
            V+ DI +   PIGR++  L+    PKT +NF+ LCTG+ G  + G  L+YK S FHRI+ +  IQ           GESI+G +F DENF + H   GVL MAN G  +NGSQF+IT   T +LD + V FG+++ G +V++++E    Q+  P     I++SG+
Sbjct:  144 VFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSGD 308          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.151e-30
Identity = 76/157 (48.41%), Postives = 91/157 (57.96%), Query Frame = -1
Query:  271 PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 738
            P GR+   LF   VP+T ENFR LCTGE     +     YK S FHRII  FM Q             SI+G+ F DENF LKH   G+LSMAN+GP TNG QFFIT     +LDG+HVVFGKV+ G+  +RK+E      +  PK  V I+  GEM
Sbjct:    2 PAGRLKCELFSDIVPRTSENFRQLCTGE--FRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENVPTGANNRPKMAVRITQCGEM 156          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = -1
Query:  337 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 735
            +G I + L+    P+T +NF  L           K  YY G SFHRII  FMIQ             SI+GE FADE N  L+HTG G+LSMANAGP+TNGSQFFIT   T WLDG+H +FG+V  GM+VV+++
Sbjct:   13 MGSIHIELYWDHAPRTCKNFYELA----------KRGYYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVKRM 135          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  337 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 735
            +G +++ L+    PKT  NF  L           +  YY  + FHRIIP+FM+Q             SIFGE F DE +  LKHTG G+LSMANAGP+TNGSQFF+T   T WLDG+H +FG+V SGM  ++++
Sbjct:   11 MGSLILELYTTHAPKTCNNFTTLV----------RRGYYDNTIFHRIIPNFMVQGGDPTGTGRGG-SSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRM 133          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.641e-25
Identity = 74/162 (45.68%), Postives = 89/162 (54.94%), Query Frame = -1
Query:  331 QEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA 813
            +E   REE   V   +Y  +E      G IV+ LF +  P TV NF  L  G   + K     +Y+G +FHR+I  FMIQ                G  F DE +  L+H  PGVLSMANAGP TNGSQFFIT V T WLDG+H VFGKV+ GM+VV  I A
Sbjct:   25 EEKMVREEGLAVADGIYAVMETNR---GTIVLSLFFEKAPLTVCNFVGLAEGTLAVCKGRP--FYQGLTFHRVIKDFMIQGGDPQGNGTGGP----GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAIIA 177          
The following BLAST results are available for this feature:
BLAST of CN184875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CYP9_CAEBR9.968e-3646.33Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYP9_CAEEL6.461e-3549.11Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIH_RHIOR2.455e-3447.93Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
PPIA_NEOCA2.455e-3451.81Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPIL6_BOVIN5.660e-3139.76Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL6_HUMAN1.261e-3041.21Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIH_USTMA2.151e-3048.41Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPIL1_RHIOR3.554e-2549.25Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIL1_GIBZE4.641e-2545.52Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPIB_TREPA4.641e-2545.68Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184875 ID=CN184875; Name=CN184875; organism=Citrus sinensis; type=EST; length=822bp
GAGGAGTAACTGTGTTCTTACAAGCAAATGCAAGCAATTCCACTATAAAC
AATGAAAAATAATGAAACACAAACTATTCTAGGAATAACAGAGCTATTAC
CAAGCTCGAATCTGTTAAAGACCATTGCAAATTGCAATAAGGAATTAGAG
TTGTTTTTCTACAGACCATATACCAACCCGAATGGATGTGGAACAAAACA
GATAGCACAAATATAGGACAAGTTATCAATTTCCATATAAAAATTTAATA
AGGATGGTCTGTCACAAAGCCATTTCACCACTGTTAGATATAACAACTTT
ACTTTTGGGCTCCCCACTCTGCCTTCCTTCCGCTTCAATTTTGCGGACAA
CGTCCATCCCAGAGAGCACTTTGCCAAACACAACATGGCGGCCATCCAAC
CAGCTAGTTATGACAGTCGTAATGAAGAACTGTGACCCATTGGTGTCTGG
CCCAGCATTTGCCATCGACAGAACTCCTGGTCCAGTGTGCTTCAGTTTAA
AGTTCTCATCAGCAAAACTTTCCCCAAATATTGACTCTCCACCACGCCCA
TCACCAAGAGTAAAATCACCGCCCTGGATCATAAAGCTTGGAATAATCCT
GTGAAATGAGCTCCCTTTATAATAAAGTGTTTTCCCACTCTTCCCAATTC
CTTTCTCCCCTGTGCAGAGTGCTCGGAAGTTTTCTACAGTTTTAGGGACA
GCCTTCCCAAATAGGCCCATAACTATGCGACCAATGGGTTTCCCACCAAC
CTCGATATCAAAGTAAACTTTGTGGGTCACTTTTTCCAATTCCTCTCTTG
AGTTGCCTTCCTGAATGAAAGC
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