CN184875

Overview
NameCN184875
Unique NameCN184875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL6_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus musculus GN=Ppil6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.826e-18
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  463 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSM 768
            VY DI +   PIGR++  L+  A P+T  NF+ LCTG  G  + G  L+YK S FHR++ +  IQ           GESI+G +F DENF + H   GVL M
Sbjct:  146 VYLDICIDLSPIGRLIFELYCDACPRTCTNFQVLCTGTSGFSERGTKLHYKDSIFHRVVQNGWIQGGDIVQGRGDDGESIYGPTFEDENFSIPHNKRGVLGM 247          

HSP 2 Score: 21.9422 bits (45), Expect = 8.826e-18
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = -2
Query:  375 TPMGHSSSLRLS*LAGWMAAMLCL 446
            TPMGH+S+     L  W+  M  L
Sbjct:  253 TPMGHNSTSHYRQLPTWIKNMWLL 276          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 63/160 (39.38%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  283 GRIVMGLFGKAVPKTVENFRALCTGEKG-----IGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEA--EGRQSGEPKSKVVISN 732
            G I + L     PKTV NF  L TG++       G+      Y G+ FHR+I  FMIQ                G  FADE + +L  T P +L+MANAGP TNGSQFF+T   T+WL G+H +FG+V   +G  VV  I A     ++  P   VVI +
Sbjct:   14 GDIEIRLLPNHAPKTVRNFVELATGQREWVNPETGEKSTDRLYDGTVFHRVISGFMIQGGDPLGNGTGGP----GYKFADEFHPELGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAIAATPTNPRTDRPLEDVVIES 169          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP10_CAEEL (Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorhabditis elegans GN=cyn-10 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 56/134 (41.79%), Postives = 70/134 (52.24%), Query Frame = -1
Query:  334 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 732
            G I + L+    PK  ENF ALC  +          YY G  FHR I  FM+Q            ESI+G  F DE    LKH   G +SMAN GPD+N SQFFIT    + LD ++ +FGKV+ G D + +IE
Sbjct:   10 GDIKIELYVDDAPKACENFLALCASD----------YYNGCIFHRNIKDFMVQTGDPTHSGKGG-ESIWGGPFEDEFVSALKHDSRGCVSMANNGPDSNRSQFFITYAKQAHLDMKYTLFGKVIDGFDTLEEIE 132          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.727e-17
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = -1
Query:  283 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 735
            +G + + L+ +  PK V NF  L           +T YYKG +FHR IP+FMIQ            +S++G+ F DE +  + H G G LSMAN G +TN SQFF     T  LD +H VFGKV+  ++V+ K+E      S  P +K++I +
Sbjct:  331 MGDLTIELYPEFAPKAVWNFIKL----------SQTGYYKGVAFHRNIPNFMIQGGDPSGSGRGG-QSVWGKYFDDEFDGPMTHNGRGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKMENVPTDGSNRPLNKILIKD 472          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  334 PKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 696
            P+  ENF  LC  E+G        YY G +FHR I +FMIQ            ESI+G+ F DE N KL H+G GV+SMAN+GP TNGSQFF+     + L+ +H VFG V+ G+  +  +E
Sbjct:  365 PRACENFITLC--ERG--------YYNGVAFHRSIRNFMIQGGDPTGTGKGG-ESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAME 475          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 57/151 (37.75%), Postives = 76/151 (50.33%), Query Frame = -1
Query:  289 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE--PKSKVVI 732
            G + + LF   VPK  ENF   C+            YY  + FHR+I +FM+Q            ESI+ + F+DE      H   GVLSMAN G +TNGSQFFIT     +LD +H +FG+++ G D +  IE    + G   P   VVI
Sbjct:  289 GPLNLELFAPKVPKACENFITHCSNG----------YYNNTKFHRLIKNFMLQGGDPTGTGHGG-ESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEGTDVPMVSVVI 428          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 63/163 (38.65%), Postives = 82/163 (50.31%), Query Frame = -1
Query:  283 GRIVMGLFGKAVPKTVENFRALCTGEKGI-------GKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSG-----MDVVRKIEAEGRQSGEPKSKVVISN 732
            G I + LFG   PKTV NF  L  G K         G SG   +Y G+ FHR+I  FMIQ                G  FADE + +L+   P +L+MANAGP TNGSQFFIT   T  L+ RH +FG+V+       ++ + K   +G  +  P   VVI +
Sbjct:   24 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGP--FYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDG--NDRPTDPVVIES 178          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 63/163 (38.65%), Postives = 82/163 (50.31%), Query Frame = -1
Query:  283 GRIVMGLFGKAVPKTVENFRALCTGEKGI-------GKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSG-----MDVVRKIEAEGRQSGEPKSKVVISN 732
            G I + LFG   PKTV NF  L  G K         G SG   +Y G+ FHR+I  FMIQ                G  FADE + +L+   P +L+MANAGP TNGSQFFIT   T  L+ RH +FG+V+       ++ + K   +G  +  P   VVI +
Sbjct:   24 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGP--FYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDG--NDRPTDPVVIES 178          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = -1
Query:  334 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE 735
            +G I + +F  +VP   ENF ALC             YY  + FHR I  FMIQ            ESI+ + F DE    LKH   G+LSMAN+GPDTNGSQFFIT      L+  + VFGK+++G++V+  +E
Sbjct:    9 LGDIKVEIFCDSVPLASENFLALCASN----------YYNNTIFHRNIKGFMIQGGDPTNTGRGG-ESIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLME 132          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 63/161 (39.13%), Postives = 80/161 (49.69%), Query Frame = -1
Query:  280 GRIVMGLFGKAVPKTVENFRALCTGEKGI-------GKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQSGEPKSKVVISNS 732
            G I + LFG  VPKTV NF  L  G K         G SG   +Y G+ FHR+I  FMIQ                G  FADE + +L+   P +L+MANAGP TNGSQFFIT   T  L+ RH +FG+V       VV  I        +  ++ V+ +S
Sbjct:   24 GDIKVALFGNHVPKTVANFVGLAQGTKEYSTQNASGGPSGP--FYDGAVFHRVIQGFMIQGGDPTGTGRGGP----GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRHTIFGEVTDPDSQKVVDAISTTATDGNDRPTEPVVIDS 178          
The following BLAST results are available for this feature:
BLAST of CN184875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
PPIL6_MOUSE8.826e-1843.14Peptidyl-prolyl cis-trans isomerase-like 6 OS=Mus ... [more]
PPIB_STRCH2.088e-1739.38Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
CYP10_CAEEL2.088e-1741.79Peptidyl-prolyl cis-trans isomerase 10 OS=Caenorha... [more]
PPIL2_GIBZE2.727e-1737.91Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]
PPIL2_ARATH4.652e-1744.26Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
CYP4_CAEEL4.652e-1737.75Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIA_MYCTU1.036e-1638.65Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO1.036e-1638.65Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL3_DICDI1.353e-1641.48Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPIA_MYCLE2.309e-1639.13Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184875 ID=CN184875; Name=CN184875; organism=Citrus sinensis; type=EST; length=822bp
GAGGAGTAACTGTGTTCTTACAAGCAAATGCAAGCAATTCCACTATAAAC
AATGAAAAATAATGAAACACAAACTATTCTAGGAATAACAGAGCTATTAC
CAAGCTCGAATCTGTTAAAGACCATTGCAAATTGCAATAAGGAATTAGAG
TTGTTTTTCTACAGACCATATACCAACCCGAATGGATGTGGAACAAAACA
GATAGCACAAATATAGGACAAGTTATCAATTTCCATATAAAAATTTAATA
AGGATGGTCTGTCACAAAGCCATTTCACCACTGTTAGATATAACAACTTT
ACTTTTGGGCTCCCCACTCTGCCTTCCTTCCGCTTCAATTTTGCGGACAA
CGTCCATCCCAGAGAGCACTTTGCCAAACACAACATGGCGGCCATCCAAC
CAGCTAGTTATGACAGTCGTAATGAAGAACTGTGACCCATTGGTGTCTGG
CCCAGCATTTGCCATCGACAGAACTCCTGGTCCAGTGTGCTTCAGTTTAA
AGTTCTCATCAGCAAAACTTTCCCCAAATATTGACTCTCCACCACGCCCA
TCACCAAGAGTAAAATCACCGCCCTGGATCATAAAGCTTGGAATAATCCT
GTGAAATGAGCTCCCTTTATAATAAAGTGTTTTCCCACTCTTCCCAATTC
CTTTCTCCCCTGTGCAGAGTGCTCGGAAGTTTTCTACAGTTTTAGGGACA
GCCTTCCCAAATAGGCCCATAACTATGCGACCAATGGGTTTCCCACCAAC
CTCGATATCAAAGTAAACTTTGTGGGTCACTTTTTCCAATTCCTCTCTTG
AGTTGCCTTCCTGAATGAAAGC
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