CN184875

Overview
NameCN184875
Unique NameCN184875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.084e-53
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = -1
Query:  268 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 771
            KV+FD+ + G P GRIVM L+    P+T ENFRALCTGEKG+G+SGK L+YKGS+FHR+IP+FM Q            ESI+G  FADENF  +HTGPG+LSMANAG  TNGSQFFI T  T WLDG+HVVFGKV+ GM+VVR IE  G  SG+    V I++ G+++
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.999e-52
Identity = 107/179 (59.78%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  271 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 804
            N +++  KVT KVYFD+++G + +GR+V GLFGK VPKTV+NF AL TGEKG G       YK S FHR+I  FMIQ           G+SI+GE F DENFKLKH GPG +SMANAG DTNGSQFFITTV TSWLDG+HVVFGKVL GMDVVRK+E+    S  +P   V+I +SG++
Sbjct:   34 NDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 4.454e-52
Identity = 110/174 (63.22%), Postives = 122/174 (70.11%), Query Frame = -1
Query:  265 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 783
            KVT KVYFD+E+GGKPIGRIV+GLFGK VPKT  NF  L    KG G       Y GS FHR+I  FMIQ           G SI+GE FADENFKLKH G G LSMANAG DTNGSQFFITTV T WLDGRHVVFGK+L GMDVVRKIE   +  G+ PK  V+I+ SG +A+
Sbjct:   26 KVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 192          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.817e-52
Identity = 110/178 (61.80%), Postives = 125/178 (70.22%), Query Frame = -1
Query:  265 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISNSGEMAL 795
            E   KVT+KVYFD+E+GG+  GRIVMGLFG+ VPKTVENFRALCTGEK  G       YKGSSFHRII  FMIQ           G SI+G  F DENF LKHTGPG+LSMANAGP+TNGSQFFI TV TSWLD +HVVFG+V+ GM +VR +E+ E R    PK    I   GE+ L
Sbjct:   88 EPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPL 258          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.597e-52
Identity = 102/179 (56.98%), Postives = 128/179 (71.51%), Query Frame = -1
Query:  268 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 804
            +S +++++   +V+FDI +GGK  GRIV  L+   VPKT ENFRALCTGEKG+GK GK L+YKGS+FHR+I  FMIQ           GESI+G  F DENF+LKH  P +LSMANAGP TNGSQFF+TTV T  LDG+HVVFG+VLSG  VVR+IE    Q  +P    VI++ GE++
Sbjct:    2 SSTDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.597e-52
Identity = 99/167 (59.28%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            KV+FD+    KP+GRIVM L    VP+T ENFRALCTGEKG G       YKG SFHR+IP FM+Q           G+SI+G  F DENF LKHTGPG LSMANAGP+TNGSQFFITT+  SWLDG+HVVFG+V  GMDVV+ IE+ G  +G P++K++I N G++
Sbjct:    5 KVFFDVSANSKPLGRIVMELRADVVPQTAENFRALCTGEKGFG-------YKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 9.922e-52
Identity = 106/179 (59.22%), Postives = 126/179 (70.39%), Query Frame = -1
Query:  271 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 804
            N +++  KVT KVYFD ++G +P+GR+  GLFGK VPKTV+NF AL TGEKG G       YK S FHR+I  FMIQ           G+SI+GE F DENFKLKH GPG +SMANAG DTNGSQFFITTV TSWLDG+HVVFGKVL GMDVVRK+E     S  +P   V+I + G++
Sbjct:   34 NDKKKGPKVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.296e-51
Identity = 102/172 (59.30%), Postives = 127/172 (73.84%), Query Frame = -1
Query:  271 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 783
            K+THKVYFDI  G +P+GR+VMGL+GK VP+T ENFRAL TGEKG G       Y+GS+FHR+I +FMIQ           G+SI+G+ F DENFKLKHT  G+LSMANAG DTNGSQFFITTV+TSWLDG+HVVFG+VL G +++ KIE ++   +  P   V I+ SGE+
Sbjct:   32 KITHKVYFDITQGDQPLGRVVMGLYGKTVPETTENFRALATGEKGFG-------YEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGEL 196          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.692e-51
Identity = 102/167 (61.08%), Postives = 116/167 (69.46%), Query Frame = -1
Query:  271 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 771
            KV+FD+ V GKP GR+   LF   VPKT ENFRALCTGEKG G SGK L+YKGS FHRIIP FM Q           GESI+G  F DENF LKHTG GVLSMANAGP+TNGSQFFIT   T WLDG H VFG+++ G  V+  +E  G QSG P +KV I + GE+
Sbjct:    8 KVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.210e-51
Identity = 99/167 (59.28%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  268 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 768
            VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+IPSFM Q           G+SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct:   48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of CN184875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CYPH_LUPLU3.084e-5358.93Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
PPIB_MOUSE1.999e-5259.78Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
CYP5_CAEEL4.454e-5263.22Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CP20C_ARATH5.817e-5261.80Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPID_NEUCR7.597e-5256.9841 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIA1_RHIOR7.597e-5259.28Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIB_RAT9.922e-5259.22Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB_GIBZE1.296e-5159.30Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
CYP5_RHIOR1.692e-5161.08Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIF_HUMAN2.210e-5159.28Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184875 ID=CN184875; Name=CN184875; organism=Citrus sinensis; type=EST; length=822bp
GAGGAGTAACTGTGTTCTTACAAGCAAATGCAAGCAATTCCACTATAAAC
AATGAAAAATAATGAAACACAAACTATTCTAGGAATAACAGAGCTATTAC
CAAGCTCGAATCTGTTAAAGACCATTGCAAATTGCAATAAGGAATTAGAG
TTGTTTTTCTACAGACCATATACCAACCCGAATGGATGTGGAACAAAACA
GATAGCACAAATATAGGACAAGTTATCAATTTCCATATAAAAATTTAATA
AGGATGGTCTGTCACAAAGCCATTTCACCACTGTTAGATATAACAACTTT
ACTTTTGGGCTCCCCACTCTGCCTTCCTTCCGCTTCAATTTTGCGGACAA
CGTCCATCCCAGAGAGCACTTTGCCAAACACAACATGGCGGCCATCCAAC
CAGCTAGTTATGACAGTCGTAATGAAGAACTGTGACCCATTGGTGTCTGG
CCCAGCATTTGCCATCGACAGAACTCCTGGTCCAGTGTGCTTCAGTTTAA
AGTTCTCATCAGCAAAACTTTCCCCAAATATTGACTCTCCACCACGCCCA
TCACCAAGAGTAAAATCACCGCCCTGGATCATAAAGCTTGGAATAATCCT
GTGAAATGAGCTCCCTTTATAATAAAGTGTTTTCCCACTCTTCCCAATTC
CTTTCTCCCCTGTGCAGAGTGCTCGGAAGTTTTCTACAGTTTTAGGGACA
GCCTTCCCAAATAGGCCCATAACTATGCGACCAATGGGTTTCCCACCAAC
CTCGATATCAAAGTAAACTTTGTGGGTCACTTTTTCCAATTCCTCTCTTG
AGTTGCCTTCCTGAATGAAAGC
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