CN184875

Overview
NameCN184875
Unique NameCN184875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPI1_STAAC (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain COL) GN=SACOL0957 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 55/160 (34.38%), Postives = 68/160 (42.50%), Query Frame = -1
Query:  337 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI----------------------------TSWLDGRHVVFGKVLSGMDVVRKI 732
            G +   LF    PKTVENF              K  YY G +FHR+I  FMIQ            ESI+G +F DE         G LSMAN+GP+TNGSQFFI  +                             T WLD +H VFG+++ G   +  I
Sbjct:   25 GDMTFKLFPNIAPKTVENFVT----------HAKNGYYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLTDGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI 173          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPI1_STAAB (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0821 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 55/160 (34.38%), Postives = 68/160 (42.50%), Query Frame = -1
Query:  337 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI----------------------------TSWLDGRHVVFGKVLSGMDVVRKI 732
            G +   LF    PKTVENF              K  YY G +FHR+I  FMIQ            ESI+G +F DE         G LSMAN+GP+TNGSQFFI  +                             T WLD +H VFG+++ G   +  I
Sbjct:   25 GDMTFKLFPNIAPKTVENFVT----------HAKNGYYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI 173          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPI1_STAA8 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00891 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 55/160 (34.38%), Postives = 68/160 (42.50%), Query Frame = -1
Query:  337 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI----------------------------TSWLDGRHVVFGKVLSGMDVVRKI 732
            G +   LF    PKTVENF              K  YY G +FHR+I  FMIQ            ESI+G +F DE         G LSMAN+GP+TNGSQFFI  +                             T WLD +H VFG+++ G   +  I
Sbjct:   25 GDMTFKLFPNIAPKTVENFVT----------HAKNGYYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI 173          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPI1_STAA3 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0857 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 55/160 (34.38%), Postives = 68/160 (42.50%), Query Frame = -1
Query:  337 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI----------------------------TSWLDGRHVVFGKVLSGMDVVRKI 732
            G +   LF    PKTVENF              K  YY G +FHR+I  FMIQ            ESI+G +F DE         G LSMAN+GP+TNGSQFFI  +                             T WLD +H VFG+++ G   +  I
Sbjct:   25 GDMTFKLFPNIAPKTVENFVT----------HAKNGYYDGITFHRVINDFMIQGGDPTATGMGG-ESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI 173          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 50/142 (35.21%), Postives = 69/142 (48.59%), Query Frame = -1
Query:  337 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENF--------KLKHTGPGVLSMANAGPDTNGSQFFITT-VITSWLDGRHVVFGKVLSGMDVVRKI 735
            +G +V+ L+ +  P+   NF  LC          K  YY     H +   F+IQ            ESIFG+ + D+          ++KH   G +SM N G D +GSQF ITT     +LDG H VFG+V  GMD+V+KI
Sbjct:    9 LGDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKI 139          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = -1
Query:  367 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKV 732
            G I + L+ K  PK   NF  LC             YY  + FHR++P F++Q            ESI+G  F DE + +L+    G+++MANAG   NGSQFF T      L+ +H +FGKV
Sbjct:   22 GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = -1
Query:  367 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKV 732
            G I + L+ K  PK   NF  LC             YY  + FHR++P F++Q            ESI+G  F DE + +L+    G+++MANAG   NGSQFF T      L+ +H +FGKV
Sbjct:   22 GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = -1
Query:  367 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKV 732
            G I + L+ K  PK   NF  LC             YY  + FHR++P F++Q            ESI+G  F DE + +L+    G+++MANAG   NGSQFF T      L+ +H +FGKV
Sbjct:   22 GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = -1
Query:  337 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENF--------KLKHTGPGVLSMANAGPDTNGSQFFITT-VITSWLDGRHVVFGKVLSGMDVVRKI 735
            +G +V+ L+ +  P+   NF  LC          K  YY     H +   F+IQ            ESIFG+ + D+          ++KH   G +SM N G D +GSQF ITT     +LDG H VFG+V  GMD+++KI
Sbjct:    9 LGDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKI 139          
BLAST of CN184875 vs. ExPASy Swiss-Prot
Match: PPIL3_EMENI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emericella nidulans GN=cyp10 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 65/201 (32.34%), Postives = 84/201 (41.79%), Query Frame = -1
Query:  247 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXGE----------------SIFGESFADENF---KLKHTGPGVLSMAN--------------AGPDTNGSQFFITTVITSWLDGRHVVFGKVLS------GMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL*QTILI 732
            G + + LF +AVPKT ENF ALC              Y  + FHR+IP FMIQ            +                SI+  S  ++      L+H   G+LSMA+               GP  NGSQFFIT      LDG   VFGKVL+      G DV+ K+E +     + K KVV     E    +T+ I
Sbjct:   10 GDLKVELFCEAVPKTAENFIALCAAGA----------YNDTPFHRLIPGFMIQGGDISLGPAANSQGTTPMLPFDDIPKGGTSIYHPSALNQEIHLPALRHNTRGILSMASRPVKNQTAPGSQGATGPTINGSQFFITFAAAPHLDGSSTVFGKVLNLTAEDEGGDVLSKLE-KANVKTDKKGKVVQPKENEETEYETLRI 199          
The following BLAST results are available for this feature:
BLAST of CN184875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
PPI1_STAAC1.829e-1334.38Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAB1.829e-1334.38Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA81.829e-1334.38Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA31.829e-1334.38Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPIL4_MOUSE6.951e-1335.21Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]
SDC10_PONAB9.079e-1336.59Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA9.079e-1336.59Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN9.079e-1336.59Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
PPIL4_HUMAN9.079e-1334.51Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]
PPIL3_EMENI1.549e-1232.34Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184875 ID=CN184875; Name=CN184875; organism=Citrus sinensis; type=EST; length=822bp
GAGGAGTAACTGTGTTCTTACAAGCAAATGCAAGCAATTCCACTATAAAC
AATGAAAAATAATGAAACACAAACTATTCTAGGAATAACAGAGCTATTAC
CAAGCTCGAATCTGTTAAAGACCATTGCAAATTGCAATAAGGAATTAGAG
TTGTTTTTCTACAGACCATATACCAACCCGAATGGATGTGGAACAAAACA
GATAGCACAAATATAGGACAAGTTATCAATTTCCATATAAAAATTTAATA
AGGATGGTCTGTCACAAAGCCATTTCACCACTGTTAGATATAACAACTTT
ACTTTTGGGCTCCCCACTCTGCCTTCCTTCCGCTTCAATTTTGCGGACAA
CGTCCATCCCAGAGAGCACTTTGCCAAACACAACATGGCGGCCATCCAAC
CAGCTAGTTATGACAGTCGTAATGAAGAACTGTGACCCATTGGTGTCTGG
CCCAGCATTTGCCATCGACAGAACTCCTGGTCCAGTGTGCTTCAGTTTAA
AGTTCTCATCAGCAAAACTTTCCCCAAATATTGACTCTCCACCACGCCCA
TCACCAAGAGTAAAATCACCGCCCTGGATCATAAAGCTTGGAATAATCCT
GTGAAATGAGCTCCCTTTATAATAAAGTGTTTTCCCACTCTTCCCAATTC
CTTTCTCCCCTGTGCAGAGTGCTCGGAAGTTTTCTACAGTTTTAGGGACA
GCCTTCCCAAATAGGCCCATAACTATGCGACCAATGGGTTTCCCACCAAC
CTCGATATCAAAGTAAACTTTGTGGGTCACTTTTTCCAATTCCTCTCTTG
AGTTGCCTTCCTGAATGAAAGC
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