CN184873

Overview
NameCN184873
Unique NameCN184873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 232
            A+ ++A    +Y  GV    I GK L+HGVL+VGY  +G       E PYW+IKNSWG +WGE GY ++ MG N C
Sbjct:  262 AIALDASSFMSYKSGVLTACI-GKQLNHGVLLVGYDMTG-------EVPYWVIKNSWGGDWGEQGYVRVVMGVNAC 329          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 232
            A+ ++A    +Y  GV    I GK L+HGVL+VGY  +G       E PYW+IKNSWG +WGE GY ++ MG N C
Sbjct:  263 AIALDASSFMSYKSGVLTACI-GKQLNHGVLLVGYDMTG-------EVPYWVIKNSWGGDWGEQGYVRVVMGVNAC 330          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 232
            AV ++A   Q Y GGV    +    L+HGVLIVG+  +        + PYWI+KNSWG +WGE GY ++ MG N C
Sbjct:  263 AVAVDATTWQLYFGGVVSLCLAWS-LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQC 330          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 232
            AV ++A   Q Y GGV    +    L+HGVLIVG+  +        + PYWI+KNSWG +WGE GY ++ MG N C
Sbjct:  263 AVAVDATTWQLYFGGVVSLCLAWS-LNHGVLIVGFNKNA-------KPPYWIVKNSWGSSWGEKGYIRLAMGSNQC 330          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 2
Query:    5 AVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 232
            AV ++A    TY GGV    +  + LDHGVL+VGY  S   P       YWIIKNSW   WGE GY +I  G N C
Sbjct:  258 AVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYNDSAAVP-------YWIIKNSWTTQWGEEGYIRIAKGSNQC 325          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:   14 INAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            ++AV  Q Y+GG+   +      +H VLI G+  +G         PYWI++NSWG +WG +GY  + MG NVCG+
Sbjct:  245 VDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDKTG-------STPYWIVRNSWGSSWGVDGYAHVKMGSNVCGI 312          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 2
Query:   38 YIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            Y  GV     CG     ++H VL VGYG          + PYW+IKNSWG  WG+NGY+K+ MG+N+CGV
Sbjct:  286 YKKGVFTSNTCGNTPMDVNHAVLAVGYGVED-------DVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGV 348          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 2
Query:   38 YIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WGE+GY+K+ MG+N+CGV
Sbjct:  284 YKSGVYASTECGDTPMDVNHAVLAVGYGVENGTP-------YWLIKNSWGADWGEDGYFKMEMGKNMCGV 346          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 2
Query:   38 YIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+
Sbjct:  290 YKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGI 352          
BLAST of CN184873 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 2
Query:    8 VGINAVWMQTYIGGV--SCPYICG-KYLDHGVLIVGYGSS----------GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 238
            V IN   +Q Y  GV  + P  C  + +DH VL+VG+G              +  R    PYWI+KNSWG +WGE GY+++  G N CGV
Sbjct:  260 VTINMKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV 349          
The following BLAST results are available for this feature:
BLAST of CN184873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LMCPB_LEIME8.197e-1347.37Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP2_LEIPI8.197e-1347.37Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
LMCPA_LEIME5.313e-1244.74Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI5.313e-1244.74Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CYSP_TRYCR9.063e-1247.37Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATO_HUMAN2.637e-1140.00Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
ALEUL_ARATH3.444e-1147.14Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP3_SOLLC5.874e-1147.14Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ORYC_ORYSJ7.672e-1145.71Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATW_MOUSE7.672e-1140.00Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184873 ID=CN184873; Name=CN184873; organism=Citrus sinensis; type=EST; length=667bp
GAGGGCAGTGGGTATCAATGCCGTTTGGATGCAAACATATATTGGAGGAG
TTTCATGCCCATACATTTGCGGGAAGTATTTGGATCATGGAGTGCTTATC
GTGGGCTATGGATCTTCAGGTTTCGCCCCGATCCGTTTCAAGGAGAAGCC
TTACTGGATCATAAAGAACTCCTGGGGAGAGAACTGGGGAGAGAATGGAT
ATTATAAGATCTGCATGGGTCGCAATGTCTGTGGGGTCGACTCCATGGTC
TCATCTGTAGCTGCTGTCCATACAACCTCAAGCTAGACATTATGGAGGTT
GTGCTAGGCAAGTGGAGCTTATATACGAAGATATTATAGGATATCCTTTT
AAATAGCCGTCTGCAATTATAAGGATGCCTACATGCGTGGGCTGAGGCAT
GAACTTTATATGCTCTTGTAATATTTAAGCATATGTCATGTCAGAATGTA
ATATTTATCCATTTTATAGTTAACCATGCTACAGAATTGTTATTGAAGAT
GGTATTAATATTTTCTTTTTATATTGGGCAGGCTTGTAGAAATATTATAA
TGTTATATTTTCTTTTTATGTAACTCAAAATAGTAGAACTTCACGTATGC
TTAGACGCTTGTATTTTCTTATTATATTTGAAGTTAGCTCTATTTAGCTC
TGTTCATATTAAAAAAA
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