CN184870

Overview
NameCN184870
Unique NameCN184870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.427e-23
Identity = 61/131 (46.56%), Postives = 77/131 (58.78%), Query Frame = 2 
Query:   32 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI 424
            S K I+LKS DG+ FE+EE  A +  TI HMIE +C DN IP+ NVT +IL  V+EYC KH                        +EDLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH---------------HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117
[Close]
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  113 IKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLT 400
            IK M EDDCADNGIPLPNVT KIL  V+EYCKKHV                       EEDLK WD +F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHV-------------------VESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80
The following BLAST results are available for this feature:
BLAST of CN184870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK7_ARATH1.427e-2346.56SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH3.887e-2155.67SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184870 ID=CN184870; Name=CN184870; organism=Citrus sinensis; type=EST; length=802bp
GAGGGTTTTCTTTTTTCTCGAAACGATGTCGTCTCCTAAGATGATCGTAC
TCAAGAGCTGTGACGGCGAGTCTTTCGAGGTCGAGGAGGCTGTCGCGCTT
GAGTCGACGACCATCAAGCACATGATCGAGGACGACTGCGCCGATAACGG
CATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGAAGGTGGTTGAGT
ATTGCAAGAAACACGTGGAGGTTCCTACGACCCAGGATAGCAACACCAGC
GGCGCCAACAGCAACGGTGCTGCCACTAACGGTGGTGAGGAGGATCTCAA
AAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCACTCTCTTCGATC
TCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACC
TGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAGGAGATTCG
AAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGAAGAAGAGG
TCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTCAACAAAGA
CAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAACATGTAGA
TGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTTTCGAACTT
ATTAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAACTGGTAGC
AGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGACCGTTGGATCAT
TGAATTTGACTAATTCCTTTTGGTTCAATGCATGTTATTTTGGCGTGTGA
AC
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