CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.496e-44
Identity = 86/167 (51.50%), Postives = 119/167 (71.26%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S +I KY G+  +L+RE+F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH S +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  207 SAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.953e-44
Identity = 82/167 (49.10%), Postives = 122/167 (73.05%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY GDG KLVRE+F +A   +PSI+FIDE+D++  +R +  +G +RE+QRT+++LL ++DGFD R ++++I ATNR + LDPA+LRPGR DR +  P+P I+ R +I +IH  +MTLA D++ ++     +  SGAD+KAI TEAG+ A+R+ +  V   DF
Sbjct:  227 SELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDF 393          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.332e-44
Identity = 85/167 (50.90%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S +I KY G+  +L+RE+F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD+ G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  207 SAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 81/167 (48.50%), Postives = 122/167 (73.05%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY GDG KLVRE+F +A   +PSI+FIDE+D++  +R +  +G +RE+QRT+++LL ++DGFD R ++++I ATNR + LDPA+LRPGR DR +  P+P I+ R +I +IH  +MTLA+D++ ++     +  SGAD+KAI TEAG+ A+R  +  V   +F
Sbjct:  227 SELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEF 393          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 88/166 (53.01%), Postives = 119/166 (71.69%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SEL+ K+ G+G +LVRE+FR+A + +PSI+FIDEIDA+ +KR D  + G+RE+QRTML+LL +LDGFD   +VKVI ATNR++ +DPA+LRPGR DR IE PLP ++ R  I  IHT +  +A DV+LE      + FSGAD+KA+  EAG  A+R     +T  D
Sbjct:  207 SELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDD 372          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.423e-44
Identity = 86/155 (55.48%), Postives = 112/155 (72.26%), Query Frame = -1
Query:  344 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 808
            +L+Q + GDG KLVR+ F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE             K    EAG++ALR
Sbjct:  239 QLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCPTISMALSAKQFGVEAGMIALR 393          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 86/167 (51.50%), Postives = 119/167 (71.26%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G +LVRELF +A   SPSI+FIDEIDA+G  R ++++ G+RE+ RT+++LL ++DGF +RGDV++I ATNRI+ LD ALLRPGR DR IE P PDI+ R  I  IH + M +   V++ +     D  +GAD+++IC EAG+ A+R     VT  DF
Sbjct:  221 SELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDF 387          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.400e-42
Identity = 85/166 (51.20%), Postives = 117/166 (70.48%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SE  QK+ G+G ++VRE+F +A   +PSIVFIDEIDA+G KR D  + GEREIQRT+++LL ++DGF    +VK+I ATNR++ LDPALLRPGR DR IE PLP+ + R+ IF+I+  +M    ++  +      + FSGA+IK +CTEAG +A+R  R  V  TD
Sbjct:  202 SEFAQKFVGEGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTD 367          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.948e-42
Identity = 80/167 (47.90%), Postives = 115/167 (68.86%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S ++ KY G+  +++RE+F  A D  P ++F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR + LDPALLRPGR+DRKIE PLP+   R  + +IH + +T   DV+ E      D F+ AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  205 SAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDF 371          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.448e-41
Identity = 80/167 (47.90%), Postives = 115/167 (68.86%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S ++ KY G+  +L+RE+F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR ++LDPALLRPGR+DRKI   LP+ + R  I +IH   +T   +++ E  V   D F+GAD++ +CTEAG+ A+R     V   DF
Sbjct:  201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDF 367          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PS10B_ARATH1.496e-4451.5026S protease regulatory subunit S10B homolog B OS=... [more]
PSMR_METAC1.953e-4449.10Proteasome-activating nucleotidase OS=Methanosarci... [more]
PS10A_ARATH3.332e-4450.9026S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_METMA4.352e-4448.50Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_AERPE4.352e-4453.01Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PR6AA_XENLA7.423e-4455.4826S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PSMR_METPE9.695e-4451.50Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_SULTO1.400e-4251.20Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS10_DICDI6.948e-4247.9026S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_SPETR3.448e-4147.9026S protease regulatory subunit S10B OS=Spermophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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