CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  314 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 787
            G G K VR+LF  A   +P I+FIDEID+VG+KR          +++T+ +LL ++DGF SR  V V+ ATNR++ LD ALLRPGR DR I+  LPDIK R  I Q+H     L+  ++L +       FSGA ++ +  EA LLA+R+ R  +   D
Sbjct:  303 GVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMND 460          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S+ ++ + G G   VR++F  A   +P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI ATNR + LDPALLRPGR DR++   LPD++ R +I ++H  R+ LA D++          FSGAD+  +  EA L A R  +  V+  +F
Sbjct:  219 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 385          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S+ ++ + G G   VR++F  A   +P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGF+    + VI ATNR + LDPALLRPGR DR++   LPD++ R +I ++H  R+ LA D++          FSGAD+  +  EA L A R  +  V+  +F
Sbjct:  219 SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 385          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S+ ++ + G G   VR++F  +  ++P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGFD    + +I ATNR + LDPALLRPGR DR+I   LPDI+ R +I Q+H  ++ L ++V+          FSGAD+  +  EA L A R  R  V  +DF
Sbjct:  219 SDFVEMFVGVGASRVRDMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNNRDVVMMSDF 385          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 71/169 (42.01%), Postives = 103/169 (60.95%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA-TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SE ++ + G G   VR+LF  A   +P IVFIDE+DA+G  R   A  GG  E ++T+ +LL ++DGF + G   ++LA TNR E+LDPALLRPGR DR++    PD+  R +I +I+  ++ L  +V L+        F+GAD+  +  EA LLA R ++  VT  DF
Sbjct:  241 SEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADF 409          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 71/171 (41.52%), Postives = 101/171 (59.06%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SE ++ + G GP  VR++F +A   +P I+FIDEIDA+G KR   H GG+ E + T+ ++L ++DGF+S  +V V+  TNR + LDPAL RPGR DR+I    PDIK R  IF++H   +    +L+ D    +       F+GADI  +C EA L+A R     V    F
Sbjct:  367 SEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHF 537          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.041e-29
Identity = 68/163 (41.72%), Postives = 98/163 (60.12%), Query Frame = -1
Query:  323 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 811
            S+ ++ + G G   VR+LF  A   SP I+F+DEIDAVG +R     GG  E ++T+ +LL ++DGF  R  V +I ATNR + LDPALLRPGR DR+I    PD+  RR + ++H+    +ADD +L+         +GAD+  +  EA LL  RE  + +T
Sbjct:  230 SDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTARENGLVIT 392          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.041e-29
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SE ++ + G GP  VR+LF +A   +P I+FIDEIDAVG KR   + GG+ E + T+ +LL ++DGF++  +V ++  TNR + LDPALLRPGR DR+I    PDIK R  IF++H   +    TL  D    +       FSGAD+  +C EA L+A R     +    F
Sbjct:  375 SEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHF 545          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = -1
Query:  338 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 811
            S  ++ Y G G K VRE+F+ A  L+P+I+FIDE+DAVG  R     GG  E ++T+ ++L ++DG +    + ++ ATNR + LDPALLRPGR DR I   LPDIK R  I ++H+    L+ ++  ++       +SGA ++ +  EA LL++RE+
Sbjct:  279 SSFVELYVGLGAKRVREMFKEARKLAPAIIFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVREK 436          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.318e-29
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = -1
Query:  323 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 811
            SE ++ + G G   VR+LF+ A + +P ++FIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + +I ATNR + LD AL+RPGR DR++    PD   R+ I ++H     LA +V+++        FSGAD+  +  EA +L  R R+  +T
Sbjct:  239 SEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAIT 401          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
FTSH_MYCPN7.968e-3043.67Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_ECOLI7.968e-3040.12Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO577.968e-3040.12Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_BUCBP7.968e-3041.32Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH3_SYNY37.968e-3042.01Cell division protease ftsH homolog 3 OS=Synechocy... [more]
AFG31_MOUSE7.968e-3041.52AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH_MYCLE1.041e-2941.72Cell division protease ftsH homolog OS=Mycobacteri... [more]
AFG32_HUMAN1.041e-2942.11AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH_MYCPU1.359e-2940.51Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH1_SYNY32.318e-2938.65Cell division protease ftsH homolog 1 OS=Synechocy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
back to top