CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18
Identity = 52/162 (32.10%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  323 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 808
            EL+ KY G   + VR+LF  A    P ++F DE D+V  +R    +G      R + ++L Q+DG +S   V ++ AT R + +DPALLRPGR+D+ I   LP+ + R  + Q   +R  + +   L++     D ++ AD+ ++  +A L+A+ +   +V+
Sbjct:  675 ELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTG---VTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVS 833          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       +  +E+ V   D FSGAD+  +C EA L  +R
Sbjct:  468 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 621          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 808
            EL+  Y G+    VR +F+ A D  P ++F DE+D+V  KR     SGG   + R + +LL +LDG  S GD V VI ATNR + LD ALLRPGR D+ +   + D  K +  I +  T + TL   +++ +        ++GAD  A+C++A L A+
Sbjct:  770 ELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAM 925          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 57/167 (34.13%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 808
            E++ KY G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  289 EILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 57/167 (34.13%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 808
            E++ KY G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  289 EILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 57/167 (34.13%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 808
            E++ KY G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  289 EILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 57/167 (34.13%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELF--------RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 808
            E++ KY G+    +R+LF        R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  289 EILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELF-------RVADDLSP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-------------RERRMKVTHTDF 808
            E++ K+ G+  K VR+LF       R   D S   ++  DEIDA+   R     G        + +LL ++DG ++  +V +I  TNR + LD ALLRPGR++ ++E  LPD   R +I QIHT++M     L  D+NL+E       +SGA+++ +   A   AL              E  +K+T  DF
Sbjct:  286 EVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTKPVEEENIKITMEDF 475          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 60/160 (37.50%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  338 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLALRER 808
            ELI  Y G   + VRE+F  A   +P I+F DE+D++   R     SGG  +  R + +LL +LDG  S  DV VI ATNR + LDPALLRPGR D+ +      D  ++ R+    T +  L   V+L   +     + +GAD+ ++C++A + AL+ R
Sbjct:  773 ELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMD--RVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRR 930          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  338 LIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 805
            L  K+ G+  ++VR LF +A   +PS +FIDEID++   R    SG     +R   ELL Q+DG          SR  V V+ ATN    +D AL R  R++++I  PLPD ++R+ +  I+   + +A DVN+E+     + +SG D+  +C +A +  +R +
Sbjct:  308 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRK 467          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PEX1_SCHPO5.357e-1832.10Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
FIGL1_HUMAN6.996e-1834.59Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
PEX6_KLULA9.137e-1837.97Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
NSF_RAT9.137e-1834.13Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE9.137e-1834.13Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN9.137e-1834.13Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR9.137e-1834.13Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
NSF_ARATH9.137e-1832.98Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
PEX6_MOUSE1.193e-1737.50Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
KTNA1_ARATH1.193e-1734.15Katanin p60 ATPase-containing subunit OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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