CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:348..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 1.263e-51
Identity = 95/166 (57.23%), Postives = 127/166 (76.51%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q Y G+G KLVR+ F +A + +P+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   VKV+ ATNR++ LDPALLR GR+DRKIEFPLP   +R +I QIH+ +MT  DD+N +E   + DEF+GA +KA+  EAG++ALR  +  V H DF
Sbjct:  250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDF 415          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.263e-51
Identity = 94/166 (56.63%), Postives = 126/166 (75.90%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F +A + +PSI+FIDE+DA+G KR+D+   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE     D+F+GA  KA+C EAG++ALR    ++TH D+
Sbjct:  220 QLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDY 385          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.650e-51
Identity = 93/166 (56.02%), Postives = 128/166 (77.11%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F +A +  P+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S  ++KVI ATNRI+ LDPALLR GR+DRKIEFPLP+ + R  I QIH+ +M ++ DVN +E   + ++F+GA +KA+C EAG++ALR    ++ H DF
Sbjct:  237 QLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDF 402          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.155e-51
Identity = 93/166 (56.02%), Postives = 129/166 (77.71%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F +A + SP+I+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   VKVI ATNR+++LDPALLR GR+DRK+EFPLP+ + R  I +IH+ +M + DD+N EE   + DE++GA +K++C EAG++ALR+   K+ H  F
Sbjct:  254 QLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHF 419          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F++A + +P I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF
Sbjct:  240 QLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 405          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F++A + +P I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF
Sbjct:  240 QLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 405          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 4.800e-51
Identity = 97/166 (58.43%), Postives = 124/166 (74.70%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q + GDG KLVR+ F +A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   +KVI ATNR + LDPAL+R GR+DRKIEFP P  + R RI QIH+ +M +  DVN EE   + D+F+GA +KA+C EAG+LALR    +V H DF
Sbjct:  239 QLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 404          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.188e-51
Identity = 93/166 (56.02%), Postives = 126/166 (75.90%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            +L+Q Y GDG +LVR+ F +A +  P+I+FIDEIDA+G KR D+   G+RE+QRTMLELLNQLDGF S  +VK+I ATNR++ LDPALLR GR+DRKIEFPLP+   R+RI QIH  +M++ DDVN +E   + + F+GA  KA+C EAG+ ALR+ + +++  DF
Sbjct:  217 QLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDF 382          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 199.904 bits (507), Expect = 1.397e-50
Identity = 93/167 (55.69%), Postives = 128/167 (76.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            +EL+QKY G+G ++VRELF +A + +PSI+F+DEID++G+ R +   GG+ E+QRTMLELLNQLDGF++  ++K+I+ATNR++ LDPALLRPGRIDRKIEFP P +  R  I +IH+ +M L   +NL +     +  SGAD+K +CTEAG+ ALRERR+ VT  DF
Sbjct:  216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDF 382          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.111e-50
Identity = 97/167 (58.08%), Postives = 128/167 (76.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G +LVRELF +A + +PSI+F+DEID++G+ R D++ G + E+QRTMLELLNQLDGF+S  ++KVI+ATNRI+ LDPALLR GRIDRKIEFP P+   R  I +IH+ +M L   ++LE         SGA++KA+CTEAG+ ALRERR+ VT  DF
Sbjct:  264 SELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDF 430          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PRS6A_YEAST1.263e-5157.2326S protease regulatory subunit 6A OS=Saccharomyce... [more]
PR6AB_XENLA1.263e-5156.6326S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6A_DICDI1.650e-5156.0226S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_SCHPO2.155e-5156.0226S protease regulatory subunit 6A OS=Schizosaccha... [more]
PS6AA_ARATH3.675e-5157.8326S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM3.675e-5157.8326S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AB_ARATH4.800e-5158.4326S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_ENCCU8.188e-5156.0226S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS8_YEAST1.397e-5055.6926S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_ENCCU3.111e-5058.0826S protease regulatory subunit 8 homolog OS=Encep... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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