CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 51/146 (34.93%), Postives = 82/146 (56.16%), Query Frame = -1
Query:  350 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 787
            G G   +R+LF  A   SP +VFIDEID+VG  R    S       +T+ +LL ++DGF S+  + V+ ATN+ E LD ALLRPGR D +I    P  + R  +  ++  ++    ++++E+       ++GADI+ +  +A + A
Sbjct:  241 GLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNR--TFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAA 384          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+     ++  L +     + +SG+DI A+  +A L  +RE
Sbjct:  396 ASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV---NLEEFVMTKDEFSGADIKAICTEAGLLALRE-RRMKVTHTD 811
            S L  K+ GD  K +R LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI ATNR   LD A+LR  R  ++I   LPD + R+ +      +  + D +   ++         FS +D+ A+C EA ++ +RE  R K++ TD
Sbjct:  306 SSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSMTD 472          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       D   E  V   D FSGAD+  +C EA L  +R
Sbjct:  471 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIR 624          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ-RTMLELLNQLDGFDSRGD----------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            +E+I    G   + +RELF  A   +PSIVFIDEIDA+G+KR +     +RE++ R + +LL  +DG  ++GD          V VI ATNR ++LDPAL R GR + +I    PD   R  I  +   ++ L    + +        F GAD++++   AG  A++
Sbjct:  301 TEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQ----QREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIK 463          

HSP 2 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE-FSGADIKAICTEAGLLALRE 811
            +EL+ KY G+    +R LF+ A   +P ++F DE+DA+ T R      G   ++R + + L +LDG + R +V VI ATNR + +DPA LRPGR    +  PLP+   R  I +    +  +   V+L+       E FSGAD+  +  +A   A+ E
Sbjct:  596 AELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSR---GKEGAWVVERLLNQFLVELDGGERR-NVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEE 749          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+      +  L +     + +SG+DI A+  +A L  +RE
Sbjct:  393 ASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 547          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGF--DSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  L PSI+FIDE+D++ ++R    S  E E  R +  E L + DG   +  GD + V+ ATNR + LD A LR  R  +++   LP+++TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  557 ASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRE 712          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 59/161 (36.65%), Postives = 94/161 (58.39%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K+ G+G KLVR LF VA    PS++FIDEID++ + R ++     R I+    E L QLDG ++  D ++++  ATNR + LD A  R  R  +++   LP+ ++R +I Q  +  +R  + +  NLE      D +SGAD++ +CTEA +  +R+
Sbjct:  383 SSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQIVQNLLVGTRHDITNH-NLERIRELTDGYSGADMRQLCTEAAMGPIRD 537          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD---------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR-RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S L+ KY G+  KLVR LF +A  LSPSI+FIDEID++ T R D  +   R I+  +L   + L    ++ +         V V+ ATN   ++D A  R  R  RK+  PLPD +TR   + ++   +     D++ E      + FSG+D+ ++  EA +  +R+   K+   DF
Sbjct:  538 SSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADF 712          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  374 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 528          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
YME1_SCHMA4.535e-1734.93Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
SPAST_XENTR4.535e-1736.25Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_CAEEL5.923e-1735.84Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
FIGL1_RAT5.923e-1735.22Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
CD48C_ARATH5.923e-1735.33Cell division control protein 48 homolog C OS=Arab... [more]
SPAST_XENLA7.735e-1736.25Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_DROMO7.735e-1737.04Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
FIGL1_CAEEL7.735e-1736.65Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
TBP6_YEAST1.010e-1633.33Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_RAT1.010e-1635.63Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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