CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  406 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRE 560          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  407 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 561          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  409 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 563          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R    S  E E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD++TR  +  ++   + +  D   L       + +SG+D+ A+  +A L  +RE
Sbjct:  574 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRE 729          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = -1
Query:  347 GDGPKLVRELFRVADDLS---PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 787
            G+  + +R++F  A + +   P+++FIDE+DA+  KR  ++S  E    R + +LL  +DG DS   +  + AT+R +++DPAL RPGR DR++    P  K R+ I ++  S M    DV+          + GAD+ A+C +A + A+
Sbjct:  267 GESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPEN---RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQAV 413          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+G K+VR LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       D   +  V   D FSGAD+  +C EA L  +R
Sbjct:  477 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIR 630          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
SPAST_PIG1.010e-1635.63Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_MOUSE1.010e-1635.63Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN1.010e-1635.63Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_DROYA1.010e-1634.18Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.010e-1634.18Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME1.010e-1634.18Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROGR1.010e-1635.80Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROER1.010e-1634.18Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
SPA5L_XENTR1.010e-1633.33Spermatogenesis-associated protein 5-like protein ... [more]
FIGL1_MOUSE1.010e-1634.59Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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