CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 51/145 (35.17%), Postives = 82/145 (56.55%), Query Frame = -1
Query:  380 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVG-TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 811
            + LI ++ GDG + + EL+ +A   +PS++FIDE+DA+G  +RY +  G   ++   +  LL ++DG +    V  I ATN  E LD A+    R + +IEF LPD + R+ + + +   M L  D  +++ V    E SG DIK
Sbjct:  191 TSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRG---DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIK 330          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSR----GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 808
            EL+  Y G+    VR +F+ A D  P +VF DE+D+V  KR +   SGG  +  R + +LL +LDG        G V VI ATNR + LDPALLRPGR D+ +   + D   ++  I +  T + TL   V+L          ++GAD  A+C++A L A+
Sbjct: 1059 ELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAV 1217          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF--QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+G K+VR LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG  +  D ++++  ATNR + +D A  R  R+ +++  PLP+   R++I    +     +LA+   +E  V+  D FSGAD+  +C EA L  +R
Sbjct:  450 SSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQ-EVEAIVLQADGFSGADMTQLCREAALGPIR 603          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S G+ ++++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+  +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  406 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE 560          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 61/178 (34.27%), Postives = 96/178 (53.93%), Query Frame = -1
Query:  314 ELIQKYFGDGPKLVRELFRVADDL-------SPS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-RERRMKVTHTD 808
            E+  K+ G     +R +F+ A D        SP  +V IDEIDA+   R  + S G       + + L ++DG +   ++  I  TNR+E LDPA +R GR    I+  LPD + R +IFQIHT ++     L+DDV++ +  +  +EFSGADI+ +   A + +L R  ++ V + D
Sbjct:  641 EIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     + +SG+D+ A+  +A L  +RE
Sbjct:  407 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRE 561          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  362 ELIQKYFGDGPKLVRELFRVADD----LSPS----IVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEA 808
            +++ KY G+    VR LF  A++    L P+    I+  DEIDA+  +R      G   +  T++ +LL ++DG D   ++ VI  TNR + +D ALLRPGR++ ++E  LP+ + R +I  IHT RM     + DDV+ +E       FSGA+++ +   A
Sbjct:  289 QILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSV--AGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAA 448          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R    S  E E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       + +SG+D+ A+  +A L  +RE
Sbjct:  569 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIRE 724          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGF--DSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R    S  E E  R +  E L + DG   +  GD + V+ ATNR + LD A LR  R  +++   LP ++TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  561 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRE 716          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV---NLEEFVMTKDEFSGADIKAICTEAGLLALRE-RRMKVTHTD 811
            S L  K+ GD  K +R LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI ATNR   LD A+LR  R  ++I   LPD + R+ +      +  + D +   ++         FS +D+ A+C EA ++ +RE  R K++ TD
Sbjct:  336 SSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREIHRSKLSVTD 502          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PRS2_METTH1.319e-1635.17Putative 26S protease regulatory subunit homolog M... [more]
PEX6_NEUCR1.319e-1637.89Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
FIGL1_XENTR1.319e-1635.63Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPAST_CHICK1.723e-1635.00Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
YR476_MIMIV2.251e-1634.27Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
SPAST_BOVIN2.251e-1635.00Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
NSF1_DROME2.251e-1634.57Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
SPAST_DROWI2.939e-1635.80Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROVI2.939e-1636.42Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_CAEBR2.939e-1635.84Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
back to top