CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 54/159 (33.96%), Postives = 89/159 (55.97%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+G K+VR LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       +  +E  V+  D FSGAD+  +C EA L  +R
Sbjct:  449 SSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIR 602          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSR--GD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 808
            EL+  Y G+    VR +F+ A D  P ++F DE+D+V  KR     SGG   + R + +LL +LDG      GD V V+ ATNR + LD ALLRPGR D+ +   + D   ++ +I Q  T +  L   V+L     T    ++GAD  A+C++A L A+
Sbjct:  881 ELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAM 1038          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTR----RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY G+G KLVR LF VA +L PSI+FIDE+D++ ++R D      R   R   E L + DG  +  + +V++  ATNR + LD A LR  R  +++   LPD  TR     ++ + H + ++ AD   L+      + +SG+D+ A+  +A L  +RE
Sbjct:  441 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEATR---RLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALR--RFTKRVYVTLPDHNTRVILLEKLLKKHNNPLS-AD--KLKYLARLTEGYSGSDLTALAKDAALGPIRE 595          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            + L  KY GDG KLVR LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A   +A L  +RE
Sbjct:  550 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRE 705          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = -1
Query:  347 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF---DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 808
            EL+  Y G+    VR++F+ A D  P +VF DE+D+V  KR +     E  + R + +LL +LDG    D    V V+ ATNR + LD ALLRPGR D+ +   + D   ++ +I +  + +  L   V+L++   +    F+GAD  A+C++A L A+
Sbjct:  887 ELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGN-QGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAM 1044          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 52/165 (31.52%), Postives = 91/165 (55.15%), Query Frame = -1
Query:  326 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL-PDIKTRRRIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLALRERRMKV 808
            EL+  Y G+    VR +F  A + SP ++F DE+D++   R ++   G   + R + +LL +LD    D+   V VI ATNR + LDP+LLRPGR D+ +   +    +++  + +  T    L + ++L E        F+GAD+ A+C++A L A++ +  ++
Sbjct:  723 ELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSG-NVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEI 886          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K++G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+  + +VI+  ATNR + LD A+LR  R+  +     P+++ R+ I ++      +   V L E     D FSG+D++ +C +A LL +R+
Sbjct:  164 STLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILR--RMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRD 317          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = -1
Query:  362 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEA 811
            S+L+ K+ G+  +LVR+LF +A +  PSI+FIDEID++   R +  S   R I+   L  +N + G D  G V V+ ATN   +LD A+ R  R +++I  PLP+   R R+F+++  ++ +     + +E     D +SG+DI  +  +A
Sbjct:  196 SDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGV-GKDESG-VLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDA 342          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  362 ELIQKYFGDGPKLVRELFRVADD--------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEA 808
            +++ KY G+    VR+LF  A++            I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ ++E  LPD   R +I +IHT+RM     +  +V+LE+       FSGA+++ +   A
Sbjct:  366 QILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR--GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAA 525          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 59/194 (30.41%), Postives = 97/194 (50.00%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADD----LSPS----IVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE---------------RRMKVTHTDF 808
            +++ KY G+    +R LF  A++    L P+    I+  DEIDA+   R      G   +  T++ +LL ++DG +   ++ VI  TNR + +D ALLRPGR++ ++E  LP+ + R +I  IHT RM     +A DV+  E       FSGA+++ +   A   A+                  +++VT  DF
Sbjct:  294 QILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSV--AGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKLRVTRADF 485          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
FIGL1_XENLA2.939e-1633.96Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
PEX6_PICAN3.839e-1637.50Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
SPAST_IXOSC8.552e-1635.58Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_DROSI8.552e-1634.18Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
PEX6_PICPA8.552e-1635.22Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
PEX6_SCHPO1.117e-1531.52Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
ATD1B_DANRE1.117e-1533.13ATPase family AAA domain-containing protein 1-B OS... [more]
VPS4_SCHPO1.459e-1534.44Suppressor protein of bem1/bed5 double mutants OS=... [more]
NSF_CAEEL1.459e-1532.72Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
NSF2_DROME1.905e-1530.41Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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