CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ GD  KLV+ LF VA    P+I+FIDE+D++ +KR    S  E E   R   E L  LDG  S  +++V++  ATNR + LD A+ R  R  R++  PLP  + R++I +  IH  +  L D   + E     D +SGAD+  +C  A +  LR
Sbjct:  317 SSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR----SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNL-DVRQVIELAELTDGYSGADVDTLCRYASMAPLR 470          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE----------FSGADIKAICTEAGLLALRE 811
            S+L+ K+ G+  KLV++LF +A +  PSI+FIDE+DA+   R +  S   R I+  +L  +N + G DS+G V V+ ATN    LD A+ R  R +R+I  PLPD+  R  +F+I         +V     V+TK++          +SG+DI  +  +A +  +R+
Sbjct:  200 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEI---------NVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 353          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K++G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  160 STLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K++G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  160 STLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K++G+  KL   +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  160 STLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 54/171 (31.58%), Postives = 90/171 (52.63%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVG-TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGL---LALRERRMKVTHTDF 811
            + LI ++ GDG + + EL+ +A   +PS++FIDE+DA+G  +R+ +  G   ++   +  LL ++DG +    V  I ATN  E LD A+    R + +IEF LP    RR + + +   M L  D ++++ V      SG DIK    +  L   LA    R++  H ++
Sbjct:  191 TSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRG---DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIEY 356          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 54/159 (33.96%), Postives = 85/159 (53.46%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL-ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S ++ K++G+  K+V  +F +A+ L P I+FIDEID+   +R    S  + E+  T+  E +   DG  + G V +I ATNRI  +D A LR  R+ ++    LP    R +I  +      L  D+ +L+        FSG+D+K +C EA L A +E
Sbjct:  160 SSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRER----SSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKE 312          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 48/148 (32.43%), Postives = 75/148 (50.68%), Query Frame = -1
Query:  371 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL-ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 811
            S L  K++G+  KL   +F VA    P+I+FIDEID+      D  S           + +   DGF S GD  +++ ATNR   +D A+LR  R+  + + P+P+ K R +I  +      + + VNL E     +  SG+D+K +C
Sbjct:  151 SNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSF---LRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 56/165 (33.94%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ------IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S ++ K+ GD  KLVR LF +A   +PS +F+DE+++V ++R     GGE E  R M  ELL Q+DG     D+  +LA + +   LD A+LR  R++++I   LP  + R+ + Q       ++S + L  D++        D +SG+DI+ +C EA +  +R+
Sbjct:  325 STIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR-GTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRK 486          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S+L+ K+ G+  KLV+ LF++A +  PSI+FIDEID++   R +  S   R I+    E L Q+ G     D + V+ ATN    LD A+ R  R +++I  PLP+   R  +F++H  S      + + +E     D +SGADI  I  +A +  +R+
Sbjct:  202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
FIGL1_DROME1.905e-1537.89Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
VPS4_YEAST2.488e-1534.73Vacuolar protein sorting-associated protein 4 OS=S... [more]
ATAD1_RAT2.488e-1534.38ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE2.488e-1534.38ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.488e-1534.38ATPase family AAA domain-containing protein 1 OS=H... [more]
PRS2_METTM3.250e-1531.58Putative 26S protease regulatory subunit homolog M... [more]
MSP1_YEAST3.250e-1533.96Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
MSP1_CAEEL3.250e-1532.43Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
KATL2_XENTR3.250e-1533.94Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_MOUSE4.244e-1534.59Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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