CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 51/157 (32.48%), Postives = 90/157 (57.32%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S+++ K+ GD  KLV++LF +A + + S++FIDE+D++ + R D  S   R I+   L  +N + G DS G + V+ ATN    LD A+ R  R +++I   LP+ + R ++FQIH  S        + ++     + +SG+DI ++  +A +  +R
Sbjct:  202 SDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIKTEFLIQMNGV-GNDSDG-ILVLAATNIPWGLDLAIRR--RFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVR 354          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDIKTRRRIF-----QIHTSRMTLADDVNLEEFVMTKDE--FSGADIKAICTEAGLLALRE 811
            S ++ K+ GD  KLVR LF +A   +PS +F+DE+++V ++R  A SGGE E   R   ELL Q+DG     D+  +LA + +   LD A+LR  R++++I   LP  + R+ +       +  SR  L     LE  V++++   +SG+DIK +C EA +  +R+
Sbjct:  321 STIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTA-SGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSR-ALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRK 482          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 811
            S L  K++G+  KL   +F +A  + P I+F+DEID+    R          ++   + L + LD  ++   V V+ ATNR + +D A+LR  R+       LP+   R  I ++  S   L++ +NL+E     + +SG+D+K +C +A +  +R+
Sbjct:  163 STLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLDTGEN-SQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRD 316          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = -1
Query:  335 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGT-KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT--KDEFSGADIKAICTEAGLLALRERR 787
            G+    VR++ + A+ +SP I++IDEID   T   ++  SG  + +  T +  L++      +  V V+   N I+SL P LLR GR D      LPD+K R  IF++H  ++        +  +++   + FSGA+I+    EA  +A  E R
Sbjct:  317 GESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLSE-----KKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNENR 465          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 43/117 (36.75%), Postives = 75/117 (64.10%), Query Frame = -1
Query:  473 ELIQKYFGDGPKLVRELFR----VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF 808
            EL+ K+ G+  + +R +F+     A + +P IVF DE+D++   R    SG   +++ T++ +LL+++DG +   +V VI A+NR + +DPA+LRPGR+D KI+   PD ++ + IF
Sbjct:  318 ELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTR---GSGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIF 431          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.510e-12
Identity = 53/165 (32.12%), Postives = 89/165 (53.94%), Query Frame = -1
Query:  341 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH-----TSRMTLADDVNLEEFVMTKDE--FSGADIKAICTEAGLLALRE 811
            S ++ K+ GD  KLVR LF +A   +PS +F+DE+++V ++R     G      R   ELL Q+DG     D+  +LA + +   LD A+LR  R++++I   LP  + R+ +   H     +    L     LE  V++++   +SG+DIK +C EA +  +R+
Sbjct:  322 STIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEARQAMI-YHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVRK 483          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = -1
Query:  341 LIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 805
            L  K+FG+  KLV  LF +A  L P+I+FIDEID    +R         +I+   + + + L    SR  V V+ ATNR   +D A+ R  R+ +    PLP+ + RR+I +++  ++ L  + +    V      SG+ IK +C  A  +  RE
Sbjct:  161 LTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQSR--VLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRE 311          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = -1
Query:  419 ELIQKYFGDGPKLVRELFR----VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 808
            EL+ K+ G+  + +R +F+     A + +P IVF DE+D++   R    +G   +++ T++ +LL+++DG +   +V VI A+NR + +DPA+LRPGR+D KI+   PD +  + I+  + +        +L EF
Sbjct:  336 ELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAEF 467          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = -1
Query:  419 ELIQKYFGDGPKLVRELFR----VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 808
            EL+ K+ G+  + +R +F+     A + +P IVF DE+D++   R    +G   +++ T++ +LL+++DG +   +V VI A+NR + +DPA+LRPGR+D KI+   PD +  + I+  + +        +L EF
Sbjct:  336 ELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAEF 467          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 56/167 (33.53%), Postives = 85/167 (50.90%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR-RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  KY GD  KLVR LF VA   + S++F+DEID++ + R D  SG E E  R +  E L Q     +            V V+ ATN    +D A  R  R  ++   PLP+ +TR + +  +  +++    + +LEE V   + +SG+DI A+  +A +  LR
Sbjct:  446 SSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARND--SGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
VPS4_DICDI8.005e-1432.48Vacuolar protein sorting-associated protein 4 OS=D... [more]
KATL2_HUMAN8.005e-1435.54Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
ATD1A_DANRE1.365e-1329.30ATPase family AAA domain-containing protein 1-A OS... [more]
YCF46_GUITH8.850e-1331.17Uncharacterized AAA domain-containing protein ycf4... [more]
MPA_RHOER8.850e-1336.75Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
KATL2_MOUSE1.510e-1232.12Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
YJNA_SCHPO1.972e-1232.26Uncharacterized AAA domain-containing protein C24B... [more]
MPA_MYCTU2.575e-1232.59Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCBO2.575e-1232.59Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
SUR2_SCHPO3.363e-1233.53Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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