CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:348..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = -1
Query:  419 ELIQKYFGDGPKLVRELFR----VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 808
            EL+ K+ G+  + +R +F+     A + +P IVF DE+D++   R    +G   +++ T++ +LL+++DG +   +V VI A+NR + +DPA+LRPGR+D KI+   PD +  + I+  + +        +L EF
Sbjct:  336 ELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTESLPVHADDLTEF 467          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 57/170 (33.53%), Postives = 82/170 (48.24%), Query Frame = -1
Query:  344 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGF---------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR----RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 811
            S L  K+ G+  KLVR LF +A  LSPSI+F+DEID++ + R  +  G E E  R +  E L Q                  V V+ ATN    +D A  R  R  R+   PLPD  TRR     + +     ++L D   +E  V   + +SG+D+ A+  +A +  LR
Sbjct:  526 SSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR--SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLED---IEAIVKATEYYSGSDLTALAKDAAMGPLR 688          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = -1
Query:  362 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEA 811
            S L+ K+ G+G K+V+  F +A    PS+VFI ++D +      +    E  + R   ELL QLDG  S  +  V V+ +T++ E +D +L R     +++  PLPD   R +I  Q+ +       D  +   V   D FSG D+  +C EA
Sbjct:  531 SALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLL----LSSQLSEESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEA 677          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YCF46_PORPU (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra purpurea GN=ycf46 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = -1
Query:  335 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA--DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 787
            G+    +RE+  +A+ LSP +++IDEID   +  Y    SG    +  T +  L++         V V+   N I++L   +LR GR D      LP+ + R  IFQIH +R+      + N+++  +  ++FSGA+I+    E+   A  E R
Sbjct:  301 GESESRMREMVTIAEGLSPCVLWIDEIDKAFSNLYSQGDSGTSARVFGTFITWLSE-----KTTPVFVVATANTIQNLPSEMLRKGRFDEIFFLDLPNNEERELIFQIHLARIRPKSWQNYNIKQLSLLCNKFSGAEIEQAIVESMHTAFSEER 449          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: YCF46_GRATL (Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria tenuistipitata var. liui GN=ycf46 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = -1
Query:  335 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD--DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 787
            G   + +R + + A+  SP I++IDEID   T+  +   SG    +  TML  L++      +  V VI   N++ SL   LLR GR D      LP ++ R +IFQIH  +         +++      D+FSGA+I+    EA   A  E+R
Sbjct:  302 GQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLTWLSE-----KKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIEQAIIEAMYNAFYEKR 450          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
MPA_MYCLE3.363e-1232.59Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
YKX4_SCHPO2.180e-1133.53Uncharacterized AAA domain-containing protein C328... [more]
FIGN_DANRE2.180e-1132.03Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
YCF46_PORPU6.342e-1129.87Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_GRATL8.284e-1131.82Uncharacterized AAA domain-containing protein ycf4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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