CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:348..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.493e-49
Identity = 94/167 (56.29%), Postives = 128/167 (76.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QK+ G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  217 SELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.493e-49
Identity = 94/167 (56.29%), Postives = 128/167 (76.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QK+ G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  217 SELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.868e-49
Identity = 95/168 (56.55%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A + +PSI+F+DEID++G+ R D+  G G+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LDPALLRPGRIDRKIEFP P  + R  I +IH+  M L   ++L+      +  SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  213 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDF 380          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.664e-49
Identity = 90/167 (53.89%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VR+LF++A      I+F DE+DA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPALLRPGR+DRK+EF LPD++ R  IF IH   M+ A D+  E         +GADI+++CTEAG+ A+R RR  V+  DF
Sbjct:  238 SELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDF 404          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.307e-48
Identity = 90/167 (53.89%), Postives = 125/167 (74.85%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+ K+ G+G KLVR+LF+VA D  P++VFIDEIDA+ +KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I ATNR + LD A+LRPGR DR IE P P++  R +IF+IHT  M +AD V+  E      + SGAD+KAICTEAG+ A+R+ R +V   DF
Sbjct:  217 SELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDF 383          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.307e-48
Identity = 98/167 (58.68%), Postives = 126/167 (75.45%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SEL+QKY G+G K+VRELF +A + +PSI+F+DEID++G+ R +    GG+ E+QRTMLELLNQLDGF+S  ++K+I+ATNRI+ LDPALLRPGRIDRKIEFP P+   R  I +IH+ RM L   +NL +        SGA+IKA CTEAG+ ALRERR+ VT  D
Sbjct:  224 SELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQED 390          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.230e-48
Identity = 90/167 (53.89%), Postives = 126/167 (75.45%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A + SPSI+FIDEID++G KR D+ + G+RE+QRT+++LL ++DGFD RG+V+++ ATNR + LDPALLRPGR DR I+ P+P  + R +I +IH  +M LADDV+L +  +  DE SGAD+ AI  EAG+ A+R  R  V  +DF
Sbjct:  227 SELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDF 393          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.912e-48
Identity = 94/167 (56.29%), Postives = 126/167 (75.45%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SE ++KY G+G +LVR +F +A + SPSI+FIDEIDAV  KR  + + G+RE+QRT+++LL +LDGF+SRG+V ++ ATNR + LDPALLRPGR DR IE PLP+   RR I +IHTS M LA++V++E      D  SGAD+KAICTEAG+ A+R+ R +VT  DF
Sbjct:  219 SEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADF 385          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.803e-48
Identity = 93/167 (55.69%), Postives = 123/167 (73.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G +LVRELF +A   +PSI+FIDEIDA+G  R D+ + G+RE+QRT+++LL ++DGFD+RGDVK++ ATNRI+ LD ALLRPGR DR IE PLPD + R  I +IHT  M + +DVNL E     +  +GAD++AIC EAG+ A+R  R  V   DF
Sbjct:  221 SELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDF 387          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.803e-48
Identity = 95/166 (57.23%), Postives = 125/166 (75.30%), Query Frame = -1
Query:  311 ELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 808
            EL+QK+ G+G +LVRELF +A + +PSI+FIDEIDA+G +R    + G+RE+QRT+ +LL ++DGFD   D+KVI ATNR + LDPALLRPGR DR I+ PLPD + R  IF+IHT  M LA+DV+L++     +  SGADIKAICTEAG++A+RE R  VT  DF
Sbjct:  248 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDF 413          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PRS8_HUMAN4.493e-4956.2926S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN4.493e-4956.2926S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_SCHPO5.868e-4956.5526S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS7_DICDI7.664e-4953.8926S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR2_HALSA1.307e-4853.89Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS8_NAEFO1.307e-4858.6826S protease regulatory subunit 8 homolog OS=Naegl... [more]
PSMR_UNCMA2.230e-4853.89Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METTH2.912e-4856.29Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METMJ3.803e-4855.69Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METKA3.803e-4857.23Proteasome-activating nucleotidase OS=Methanopyrus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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