CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:348..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 92/167 (55.09%), Postives = 130/167 (77.84%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SE +QKY G+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +G +RE+QR ++ELL Q+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP   D + RR +FQ  T++M L+ +V+L+ F+M  D  SGA I AI  +AGLLA+R+ R  +  +D
Sbjct:  202 SEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSD 368          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.473e-48
Identity = 95/168 (56.55%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG-EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SGG + E+QRTMLELLNQLDGF+S  ++KV++ TNRI+ LDPALLRPGRIDRKIEFP P    R  I +IH+ +M L   +NL++     +  SGA++KA+CTEAG+ ALRERR+ V+  DF
Sbjct:  213 SELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDF 380          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.107e-47
Identity = 96/167 (57.49%), Postives = 123/167 (73.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++KY G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT RM L   V+L       +  SGAD+KAI TEAG+ A+RERR  VT  DF
Sbjct:  205 SELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLR-GVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDF 370          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.107e-47
Identity = 94/167 (56.29%), Postives = 128/167 (76.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QK+ G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRIDRKIEFP P+ + R  I +IH+ +M L   +NL +        SGA++K +CTEAG+ ALRERR+ VT  DF
Sbjct:  212 SELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 377          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.445e-47
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SE  QK+ G+G ++VRELF +A   +PSI+FIDEIDA+G KR D  + GEREIQRT+++LL +LDGFD   +VK+I ATNRI+ LDPALLRPGR DR IE PLPD K R  IF I+  +M + D++NLE      + FSGADIK +C EA  +A+R+ R KVT  D
Sbjct:  202 SEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMND 367          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/167 (52.69%), Postives = 122/167 (73.05%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A      ++F DEIDA+G  R+D  +GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRKIEF LPD++ R  I +IH   M++  D+  E         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  243 SELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDF 409          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.220e-47
Identity = 93/167 (55.69%), Postives = 125/167 (74.85%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE   PD   R  IF+IHT +M +   V+L E     +   GADIKA+CTEAG+ A+RE R  VT  DF
Sbjct:  216 SELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDF 381          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.492e-47
Identity = 87/167 (52.10%), Postives = 121/167 (72.46%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A      ++F DEIDAVG  R+D   GG+ E+QRTMLEL+NQLDGFD RG++KV++ATNR ++LDPAL+RPGR+DRK+EF LPD+  R  I +IH  +M++  D+  +         +GA+I+++CTEAG+ A+R RR   T  DF
Sbjct:  245 SELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDF 411          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.492e-47
Identity = 91/163 (55.83%), Postives = 127/163 (77.91%), Query Frame = -1
Query:  326 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 811
            SE +QKY G+GP++VR++FR+A + SP+I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGF+   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP L D + RR IF    S+M+L+ +V+L+  ++  +  SGA I AI  EAGL A+R+ R  +
Sbjct:  234 SEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNI 396          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.173e-47
Identity = 93/167 (55.69%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I ++HT +M L  +V+L       +  SGAD+KAI TEAG+ A+R+RR  VT  DF
Sbjct:  206 SELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDF 371          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PRS6B_SCHPO6.488e-4855.0926S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS8_DICDI8.473e-4856.5526S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_PYRFU1.107e-4757.49Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS8_XENLA1.107e-4756.2926S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PSMR_SULSO1.445e-4756.63Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS7_PONAB2.465e-4752.6926S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PSMR_METVS3.220e-4755.69Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS7_CAEEL5.492e-4752.1026S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS6B_ASPNG5.492e-4755.8326S protease regulatory subunit 6B homolog OS=Aspe... [more]
PSMR_THEGJ7.173e-4755.69Proteasome-activating nucleotidase OS=Thermococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
back to top