CN184861

Overview
NameCN184861
Unique NameCN184861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4351 contig Csv1_Contig4351:348..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.560e-46
Identity = 91/167 (54.49%), Postives = 123/167 (73.65%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G +LVRELF +A + +PSIVFIDEIDA+G  R +A + G+RE+QRT+++LL  +DGF+ RGDVK+I ATNRI+ LD ALLRPGR DR IE PLPD + R  I ++HT  M L++DV+L E     +  +GA++ AIC EAG+ A+R+   +V   DF
Sbjct:  221 SELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDF 387          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.649e-46
Identity = 89/167 (53.29%), Postives = 121/167 (72.46%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF++A      I+F DEIDA+G  R+D   G + E+QRTMLE+L QLDGFD+RG++KV++ATNR + LDPALLRPGR+DRK+EF LPD++ R +IF+IHT  M+   D+  E         +GADI+++C EAG+ A+  RR  VT  DF
Sbjct:  273 SELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDF 439          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.072e-46
Identity = 90/167 (53.89%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  216 SELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.072e-46
Identity = 89/167 (53.29%), Postives = 126/167 (75.45%), Query Frame = -1
Query:  314 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 811
            SE + KY G+GP++VR++FR+A + +PSI+FIDE+D++ TKR+DA +G +RE+QR ++ELL Q+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP L D + RR IF    S+M+LA + +L+  ++  D  SGA I AI  EAGL A+R+ R  +  +D
Sbjct:  240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 406          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.036e-45
Identity = 92/167 (55.09%), Postives = 122/167 (73.05%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ RT+++LL ++DGFD  G+VK+I ATNR + LDPALLRPGR DR IE PLP+ K+R  I +IHT RM L   V+L       +  SGAD+KAI  EAG+ A+R+RR  VT  DF
Sbjct:  207 SELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDF 372          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.036e-45
Identity = 90/167 (53.89%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  216 SELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.036e-45
Identity = 90/167 (53.89%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  216 SELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.936e-45
Identity = 86/167 (51.50%), Postives = 117/167 (70.06%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL+QKY G+G ++VRELF +A      I+F DEIDA+G  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ ATNR  +LD AL+RPGRIDRK+EF LPD++ R  I +IH   M +  D+  E         +GA+++++CTEAG+ A+R RR   T  DF
Sbjct:  247 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDF 413          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.768e-45
Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            S ++ KY G+  +++RE+F  A D  P IVF+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFDS G VKVI+ATNR ++LDPALLRPGR+DRKIE  LP+ ++R  I +IH++++T   +++ E  V   D FS AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  218 SAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDF 384          
BLAST of CN184861 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.496e-44
Identity = 83/167 (49.70%), Postives = 119/167 (71.26%), Query Frame = -1
Query:  311 SELIQKYFGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 811
            SEL++K+ G+G +LVR+LF +A+   P+I+FIDEIDAV  KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I ATNR + LD A+LRPGR DR IE P P+   R RI +IH   M +AD V+  +      EFSGA + ++ TEAG+ A+R+ R +V   DF
Sbjct:  220 SELVRKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDF 386          
The following BLAST results are available for this feature:
BLAST of CN184861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PSMR_METHJ3.560e-4654.49Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS7B_ARATH4.649e-4653.2926S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_METMP6.072e-4653.89Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6B_YEAST6.072e-4653.2926S protease regulatory subunit 6B homolog OS=Sacc... [more]
PSMR_THEON1.036e-4555.09Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METM61.036e-4553.89Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM51.036e-4553.89Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS7_SCHPO3.936e-4551.5026S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS10_CAEEL8.768e-4551.50Probable 26S protease regulatory subunit S10B OS=C... [more]
PSMR1_HALSA1.496e-4449.70Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184861 ID=CN184861; Name=CN184861; organism=Citrus sinensis; type=EST; length=811bp
GAGGGTAATCTTTCATTAGGAATTGGAGAAATGAAGCTAAAAGAGCAACC
AGGATAACAATACCACAACAAAATCTGGAACGGAAAGAAACCAAAGCGGC
TGCTAACTTGCATGTAGACCTTACAAAACAACAGTAAACAACAATGTTTA
AAGTCCAAAAGAAGCCGCTTCGAAAGTGCTAACAGTTGAATTTGGAAATA
CAGCAAAATGAACTAAACAGTAAAATGCAGAACAGTAAAGTCTTTCACAT
ATAAAGCCCTTCTGGCACCCCTTCTTTCTTCTTGAACATCACCTTTTCCT
TTGCTTTCTTAAAATCTGTATGCGTCACCTTCATGCGGCGCTCTCTCAAA
GCAAGCAAACCAGCTTCAGTACATATAGCCTTTATATCAGCTCCAGAGAA
CTCATCTTTGGTCATAACAAACTCTTCCAAGTTGACATCATCAGCCAAGG
TCATCCTTGATGTGTGAATCTGGAAAATACGTCTCCTAGTCTTGATATCG
GGAAGAGGAAATTCAATCTTTCTATCTATTCGACCTGGCCGAAGTAAAGC
TGGATCCAGGCTTTCAATTCGGTTGGTTGCAAGAATTACTTTGACATCTC
CTCTAGAATCAAACCCATCCAACTGGTTCAGCAACTCCAACATGGTTCTC
TGAATTTCACGTTCGCCACCTGAGTGGGCATCATACCTCTTCGTACCAAC
TGCATCAATTTCATCAATGAAGACGATAGAAGGTGACAGATCATCAGCAA
CTCTGAAAAGTTCCCTTACTAATTTTGGTCCATCACCGAAGTACTTCTGA
ATTAATTCACT
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