CN184846

Overview
NameCN184846
Unique NameCN184846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 72/162 (44.44%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   +Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   ++V GWD++EGG++YG  +GG +I QPFAI      Y+YG+ D A+K GMT EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAIT 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 74/162 (45.68%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +S
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLS 178          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 74/162 (45.68%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTII + ++GGVVLG+DSR S G  V NR  +K++ L D +Y   SGSAAD+QT+++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   +IV GWDK  GG++Y V L G +  QPFA+      Y+YGF D  +++ M+KE+ +Q VV  +S
Sbjct:   18 GTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLS 178          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L + +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG  LGG +  QPFAI      ++YG+ D A+K GM+ EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 70/165 (42.42%), Postives = 107/165 (64.85%), Query Frame = 3
Query:  111 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALA 178          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAIT 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAIT 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAIT 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  117 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            GTTI+ V ++GGVV+G+DSR S G  V NR  DK++ L   ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   +IV GWD+ EGG++YG  +GG +I QPF I      Y+YG+ D A+K GMT EE  +    A++
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAIT 180          
BLAST of CN184846 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 70/165 (42.42%), Postives = 107/165 (64.85%), Query Frame = 3
Query:  111 SMGTTIIGVTYNGGVVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEQLVVKAVS 602
            S GTTI+ VT+NGGV++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE  Q    A++
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALA 178          
The following BLAST results are available for this feature:
BLAST of CN184846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSB9_RAT7.410e-3644.44Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_SALSA1.651e-3545.68Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY1.651e-3545.68Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB9_HUMAN4.803e-3545.06Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]
PB6LB_SALSA4.803e-3542.42Proteasome subunit beta type-6-B like protein OS=S... [more]
PSB9_MUSSI8.193e-3543.83Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB8.193e-3543.83Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSDU8.193e-3543.83Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE8.193e-3543.83Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PB6LA_SALSA8.193e-3542.42Proteasome subunit beta type-6-A like protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184846 ID=CN184846; Name=CN184846; organism=Citrus sinensis; type=EST; length=604bp
GAGGAAATTAAACTCAAAATTAAAATTGTTAAGGGCATTTAGAAATTGTG
GTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATGGAAGATTTTAA
CGCGCCACACTCGATGGGTACTACTATCATCGGCGTCACTTACAACGGCG
GCGTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGGTGTATGTTGCT
AACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAATGTCTACCTTTG
CCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGACTATGTTCGCT
ACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTGCAACTGTTAAA
GTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAACAAGAACTTTTT
GCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGAAGGTGGTAAAA
TATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGCCTTTTGCAATT
GGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGATCAGGCATGGAA
AGAGGGAATGACCAAGGAAGAAGCTGAGCAATTAGTGGTTAAAGCAGTTT
CTCT
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