CN184837 | Citrus Genome Database

Overview


Name	CN184837
Unique Name	CN184837
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	773

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.424e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -2

Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  182 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
            MQIFVKTLTGKTI LEVE  DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = -2

Query:  638 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 772
            DKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   32 DKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -2

Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2

Query:  182 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
            MQIFVKTLTG TI LEVE  DTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = -2

Query:  638 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 772
            DKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   32 DKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -2

Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = -2

Query:  179 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 409
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGGN 77

HSP 3 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -2

Query:  638 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 772
            DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = -2

Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = -2

Query:  182 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
            MQIF+KTLTGKTIT E E  +T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -2

Query:  638 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 772
            DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -2

Query:  416 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 604
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = -2

Query:  188 TITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 376
            TITLEVE  DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 3 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = -2

Query:  644 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 772
            DKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   21 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = -2

Query:  410 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 631
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = -2

Query:  182 IFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 403
            I VKTLTGK I +++E  DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -2

Query:  410 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 631
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -2

Query:  182 IFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 403
            I VKTLTGK I +++E  DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -2

Query:  410 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 631
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -2

Query:  182 IFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 403
            I VKTLTGK I +++E  DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -2

Query:  410 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 631
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -2

Query:  182 IFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 403
            I VKTLTGK I +++E  DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = -2

Query:  401 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 637
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -2

Query:  179 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 409
            M I VKTLTGK I +++E  D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGGD
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77

HSP 3 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = -2

Query:  629 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 772
            +KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   32 EKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

The following BLAST results are available for this feature:

BLAST of CN184837 vs. ExPASy Swiss-Prot

BLAST of CN184837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_LEIMA	2.424e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	7.799e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	4.005e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	2.596e-27	76.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	9.865e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_DESAN	2.354e-20	64.86	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	3.074e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	3.074e-20	63.51	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	3.074e-20	63.51	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	3.074e-20	58.23	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0006D07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184837 ID=CN184837; Name=CN184837; organism=Citrus sinensis; type=EST; length=773bp
GAGGAACTACTGCTTATATTATTATTGCTGATAGAAAGAGGAAATTAGGC
CCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAAGCAAA
GCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCAAACGC
GGACACATCCACATATATTTTTTTAGAAGTCACCACCACGGAGACGGAGG
ACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCG
GCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAG
GAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCT
TAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAACGTCTTGACGAA
GATCTGCATTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCT
TCTGGATGTTATAATCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG
GCGAAGATGAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGAT
CTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGA
TCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCATGCCGCCGCGGAGA
CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAA
GGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGT
CCGGTGGAATCCCTTCCTTGTCC