CN184837

Overview
NameCN184837
Unique NameCN184837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 2 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  182 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
            M I VKTLTGK I L+++  D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -2
Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  179 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 409
            M + VKTLTGK I++E++  D + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG+
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGGN 77          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = -2
Query:  182 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 625
            VK L G    + V +S T+  +K +I  K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV    T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:    7 VKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          

HSP 2 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = -2
Query:  410 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 769
            K G+P  QQRL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:   35 KIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  182 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 640
            G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA   +   ST+ LV+ +    + I V+   G++ T EV    T+ ++K ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:    2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = -2
Query:  182 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 631
            + V++     +T +    D++  +K  ++ K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V    ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          

HSP 2 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = -2
Query:  410 KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 769
            K  +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   40 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UCRP_BOVIN (Ubiquitin cross-reactive protein OS=Bos taurus GN=ISG15 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = -2
Query:  182 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 640
            G  + VK L G+ I + +  S T+  +K  I  K  +P  QQRL     +  L++G  L    ++  ST+ LV++    + I V+   G++   EV+   T+  +K ++  KE +  DQ  L F G+ ++D   L +Y + K  T+ + LRLRGG
Sbjct:    2 GGDLTVKMLGGQEILVPLRDSMTVSELKQFIAQKINVPAFQQRLAHLDSREVLQEGVPLVLQGLRAGSTVLLVVQ--NCISILVRNDKGRSSPYEVQLKQTVAELKQQVCQKERVQADQFWLSFEGRPMDDEHPLEEYGLMKGCTVFMNLRLRGG 154          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = -2
Query:  182 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 601
            +T +   SD +  +   I+ +  +    Q L+   K L+  R L+ Y I KE+T+HL L++         + +      G+   L V    ++  VK  I++   +PP +Q +   GK+LEDG+ +ADYNI+  S L L     GG
Sbjct:   16 MTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
BLAST of CN184837 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  410 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 637
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          

HSP 2 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  182 MQIFVKTLTGKTITLEVES*DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CN184837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
UBL1_SCHPO5.426e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.336e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UCRP_MOUSE5.078e-1534.23Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UCRP_HUMAN5.615e-1433.97Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
UBD_HUMAN9.578e-1430.77Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_BOVIN1.171e-1130.97Ubiquitin cross-reactive protein OS=Bos taurus GN=... [more]
UBD_RAT1.529e-1129.45Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]
ANUB1_HUMAN5.811e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184837 ID=CN184837; Name=CN184837; organism=Citrus sinensis; type=EST; length=773bp
GAGGAACTACTGCTTATATTATTATTGCTGATAGAAAGAGGAAATTAGGC
CCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAAGCAAA
GCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCAAACGC
GGACACATCCACATATATTTTTTTAGAAGTCACCACCACGGAGACGGAGG
ACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCG
GCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAG
GAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCT
TAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAACGTCTTGACGAA
GATCTGCATTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCT
TCTGGATGTTATAATCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG
GCGAAGATGAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGAT
CTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGA
TCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCATGCCGCCGCGGAGA
CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCCAA
GGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGT
CCGGTGGAATCCCTTCCTTGTCC
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