CN184836

Overview
NameCN184836
Unique NameCN184836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.335e-69
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPLGWPIGG     G
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.968e-69
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPLGWPIGG     G
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.552e-68
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +DKIIAEYIW+GGSG+D+RSKART+ GP++D S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+AAKIFSH DVVAE PWYGIEQEYTLLQKDV WPLGWP+GG     G
Sbjct:   16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+K+IAEYIWIGGSGMD+RSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSE I Y    F+DPFRRGNNILV+CDAYTPAGEPIPTNKRHAAAK+FSH DVVAE PWYGIEQEYTLLQKD++WPLGWP+GG     G
Sbjct:   16 TEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKDIQWPLGWPVGGFPGPQG 154
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TDKIIAEYIWIGGSGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIFS+ +V  E  WYGIEQEYTLLQKD  WPLGWP+GG     G
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLLQKDTNWPLGWPLGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 113/140 (80.71%), Postives = 126/140 (90.00%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TDKIIAEYIW+GGSG+D+RSKART+ GP++DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+ AA +FSH DV AE PWYGIEQEYTLLQKD+ WPLGWP+GG     G
Sbjct:   16 TDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVFSHPDVAAEVPWYGIEQEYTLLQKDLSWPLGWPVGGYPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.994e-67
Identity = 113/140 (80.71%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TD+IIAEYIWIGG+G+D+RSKART+ GP++DP +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++AAK+FSH DV AE PWYGIEQEYTLLQKDV WPLGWP+GG     G
Sbjct:   16 TDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVFSHPDVAAEVPWYGIEQEYTLLQKDVSWPLGWPVGGYPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.518e-67
Identity = 116/140 (82.86%), Postives = 123/140 (87.86%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIWIGGSGMD+RSKAR LPGPV+ PSKLPKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILVMCD YTP GEPIPTNKR+ AAKI S+ DV  EEPWYGIEQEYTLLQKD+ WPLGWP+GG     G
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.112e-66
Identity = 114/140 (81.43%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHAAAKIFSH DV AEEPW+GIEQEYTLLQKD+ WP+G  +GG     G
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQKDIHWPIGMALGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.898e-66
Identity = 115/140 (82.14%), Postives = 125/140 (89.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH A KIF H +V AEEPW+GIEQEYTLL+KDVKWPLGWP+GG     G
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWPLGGFPGPQG 155
The following BLAST results are available for this feature:
BLAST of CN184836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA3_PEA5.335e-6984.29Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA6.968e-6984.29Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLN12_ORYSJ1.552e-6883.57Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA1_SOYBN1.716e-6783.57Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA_LACSA2.242e-6785.00Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA5_MAIZE3.824e-6780.71Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA1_MAIZE4.994e-6780.71Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA3_HORVU8.518e-6782.86Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA3_LUPAN1.112e-6681.43Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLN15_ARATH1.898e-6682.14Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184836 ID=CN184836; Name=CN184836; organism=Citrus sinensis; type=EST; length=709bp
GAGGCTTTTTTATTGTCAACACTGCGAAACCGCACTATAAAAGCCAGGCA
ACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCACATTAACATCCCTTC
AATCACAGTAATCTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAG
AGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTC
AGAATCCACTGACAAGATCATCGCTGAGTACATATGGATCGGTGGATCTG
GCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGAT
CCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGC
ACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGG
ATCCATTCAGGAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACT
CCTGCGGGGGAACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGAT
TTTCAGCCATTCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGC
AGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCC
ATCGGTGGGTTATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTG
CTGACAAAGCTTGGGGGGCGCGACATTGTAGAACTCCCATTTACAAGGCC
TGTCTATAT
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