CN184836

Overview
NameCN184836
Unique NameCN184836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 69/139 (49.64%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  214 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            K++AEYIWI G    +RSK  TL    S   +L  WN+DGSSTGQAPG +S+ +L P A++ DPFRRG+NILV+   YT  G P   N R A AK+   H+D   +E W+GIEQEYT+L    + P GWP GG     G
Sbjct:   27 KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD---KETWFGIEQEYTMLDYYDR-PFGWPKGGFPGPQG 160          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  214 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE-EPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+    D  AE EPW+G+EQEYTLL  D + P GWP GG     G
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPDNR-PYGWPTGGFPAPQG 158          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  217 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            ++AEYIWI     ++RSK +TL    +    LP+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK+ S  +   E  W+GIEQEYT+  +    P+GWP GG     G
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDN-PVGWPKGGFPAPQG 147          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  220 IAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLG 594
            I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH A  IF       E+PWYG+EQEY + +KD   P+G
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIFEKYQ--NEKPWYGLEQEYFIFRKDTNQPIG 145          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  211 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHA-AAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +++ A Y+WI G+G ++R K R L    S    LP W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CD Y+  G+P  +NKR A  A I   SD   +EPW+GIEQEYTLL  D + P GWP  G     G
Sbjct:   60 NRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAAIDLISD---QEPWFGIEQEYTLLDVDGR-PFGWPENGFPAPQG 196          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  217 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            I+AEY+W+   G   RSK+RTLP     P  LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+  +++D   +EP +G+EQEYTLL  D + P GWP GG     G
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDTYAD---DEPLFGLEQEYTLLGSDNR-PYGWPAGGFPAPQG 156          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 62/140 (44.29%), Postives = 85/140 (60.71%), Query Frame = 1
Query:  211 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            DK+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P GWP  G     G
Sbjct:   24 DKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQRPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQG 159          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  214 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWP 600
            K+ A YIWI G+G  +R K RTL       ++LP+WN+DGSST Q+ G +S++ L P A+F+DPFRR  N LV+C+      +P  +N RH+  KI S   +  E PW+G+EQEYTLL  D   P GWP
Sbjct:   54 KVQAMYIWIDGTGEAVRCKTRTLDNEPKSIAELPEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKIMSM--IANEYPWFGMEQEYTLLGTD-GHPFGWP 179          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 1
Query:  211 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P GWP  G     G
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQG 159          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 1
Query:  211 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +KI   YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+  +I     V ++ PW+G+EQEYTL+  D   P GWP  G     G
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRIMDM--VSSQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQG 159          
The following BLAST results are available for this feature:
BLAST of CN184836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_SCHPO4.133e-2949.64Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_FUSSH5.398e-2947.48Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_YARLI4.569e-2845.99Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_MIMIV4.569e-2850.39Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA1_DROME5.968e-2847.52Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_GIBFU1.329e-2746.38Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_BOVIN3.868e-2744.29Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_SQUAC5.052e-2747.29Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_CANFA5.052e-2743.57Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_RAT8.617e-2743.17Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184836 ID=CN184836; Name=CN184836; organism=Citrus sinensis; type=EST; length=709bp
GAGGCTTTTTTATTGTCAACACTGCGAAACCGCACTATAAAAGCCAGGCA
ACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCACATTAACATCCCTTC
AATCACAGTAATCTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAG
AGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTC
AGAATCCACTGACAAGATCATCGCTGAGTACATATGGATCGGTGGATCTG
GCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGAT
CCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGC
ACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGG
ATCCATTCAGGAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACT
CCTGCGGGGGAACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGAT
TTTCAGCCATTCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGC
AGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCC
ATCGGTGGGTTATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTG
CTGACAAAGCTTGGGGGGCGCGACATTGTAGAACTCCCATTTACAAGGCC
TGTCTATAT
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