CN184836

Overview
NameCN184836
Unique NameCN184836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  211 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            +K+   Y+WI G+G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI     V    PW+G+EQEYTLL  +   P GWP  G     G
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIMEM--VNDHRPWFGMEQEYTLLGIN-GHPYGWPENGFPGPQG 159          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  223 AEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            AEYIWI G+     +RSK + + G  +    LP W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A++       A+EP +GIEQEYT  Q    +PLG+P GG     G
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAER--FAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQG 137          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  217 IIAEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGG 609
            I AEYIWI G+     +RSK + L    SD S+LP+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R     +        +EP +GIEQEYT L+ D   PLG+P GG
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAER--FAGQEPIFGIEQEYTFLKGD--RPLGFPEGG 127          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  223 AEYIWIGGSGMD--MRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQKDVKWPLGWP 600
            AEYIWI G+  +  MRSK R     + D  +   W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R AA  +   ++D+    P +GIEQEYT   KD + P GWP
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRI----IKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAAALGVAERYADM---SPMFGIEQEYTFF-KDGR-PYGWP 123          
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  226 EYIWIGGSGMDMRSKART-LPGPVSDPS--KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGG 609
            EYIW+ G       + +T +    S P+  +LP W +DGSST QA G  S+ +L P A+F D   R N +LVMC+   P G+ P  +NKR   A I   +       W+G EQEY    KD + PLG+P  G
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDA-ARTNGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEY-FFYKDGR-PLGFPTSG 127          
The following BLAST results are available for this feature:
BLAST of CN184836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_XENLA1.682e-2241.01Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA2_STRVR1.740e-1940.88Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY2.969e-1942.86Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL4.012e-1643.41Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_BRAJA1.578e-1239.39Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184836 ID=CN184836; Name=CN184836; organism=Citrus sinensis; type=EST; length=709bp
GAGGCTTTTTTATTGTCAACACTGCGAAACCGCACTATAAAAGCCAGGCA
ACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCACATTAACATCCCTTC
AATCACAGTAATCTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAG
AGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTC
AGAATCCACTGACAAGATCATCGCTGAGTACATATGGATCGGTGGATCTG
GCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGAT
CCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGC
ACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGG
ATCCATTCAGGAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACT
CCTGCGGGGGAACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGAT
TTTCAGCCATTCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGC
AGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCC
ATCGGTGGGTTATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTG
CTGACAAAGCTTGGGGGGCGCGACATTGTAGAACTCCCATTTACAAGGCC
TGTCTATAT
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