CN184834

Overview
NameCN184834
Unique NameCN184834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10216 contig Csv1_Contig10216:38..414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = -2
Query:   65 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXI--ERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKEL 376
            SLSELE IH +KT  LL A+                 + +  YA  IGL FQV DDILD+   S  +GK  G DL  DK+TYPKL+G+  AK+ A +L+  A  EL
Sbjct:  169 SLSELELIHRNKTGALLIAALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDLYQSALSEL 274          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = -2
Query:   80 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQ 376
            +L+ELE IH+HKT +L+ A+              IE++    + +GL+FQ+ DDILDV  S   +GKT G DL +DK+TY  L+G+E +K+  ++  ++
Sbjct:  166 TLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKLTE 264          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = -2
Query:   29 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLY 376
            +LSELEYIH HKT K+L+ S                 +  +A  +GL FQ+ DDILD+  +   +GK  G D  ++KATYP L+ +  AK+        A + L   +V  AA  Y
Sbjct:  172 TLSELEYIHRHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGAKEKLAFHIEAAQRHLRNADVDGAALAY 287          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 51/126 (40.48%), Postives = 65/126 (51.59%), Query Frame = -2
Query:    8 LSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRN-YARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFS---QATKELAYFEVSKAAPLYHLAKYIV 373
            L  LE IH HKT  L+ A+                 V + YA  IGL FQV DDILDV   +  LGK  G D    K+TYP L+G+E A+K A +L     Q+ K+LA   +  +A L  LA YI+
Sbjct:  171 LDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSA-LEALADYII 295          
BLAST of CN184834 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = -2
Query:   11 SLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLLSDKATYPKLMGIENAKKFADELFSQATKELAYFEVSKAAPLYHLAKYI 376
            +L ELE IH  KTAKLL                 IE +R ++  IG+ FQ+ DDILD+  S   +GK  G D  +DK+TYP L+ +E AK   D    +A + +    + K   LY L   I
Sbjct:  171 TLEELESIHERKTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVHIKEAKRLIGGLSLQKDL-LYELCDLI 291          
The following BLAST results are available for this feature:
BLAST of CN184834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ISPA_HAEIN5.089e-1544.34Geranyltranstransferase OS=Haemophilus influenzae ... [more]
ISPA_MICLU1.253e-1338.38Geranyltranstransferase OS=Micrococcus luteus GN=f... [more]
ISPA_BACST6.221e-1336.21Geranyltranstransferase OS=Bacillus stearothermoph... [more]
ISPA_ECOLI1.386e-1240.48Geranyltranstransferase OS=Escherichia coli (strai... [more]
ISPA_BACSU3.087e-1236.89Geranyltranstransferase OS=Bacillus subtilis GN=is... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184834 ID=CN184834; Name=CN184834; organism=Citrus sinensis; type=EST; length=377bp
TGTCACCAACAATATATTTAGCTAAATGGTACAATGGGGCAGCCTTTGAA
ACTTCAAAATAAGCAAGCTCTTTAGTGGCTTGAGAGAATAACTCGTCTGC
AAATTTCTTCGCATTCTCAATACCCATCAGCTTTGGATACGTGGCCTTAT
CACTCAGCAAATCTTTTCCTGCTGTCTTCCCTAACACTGTAGATGACTTA
GTCACATCTAAAATATCATCCACCACTTGAAATAATAATCCTATACACCT
TGCATAATTTCTAACTCTTTCTATTTCAATCACATTTCCTCCTCCGATTA
TCACTCCGCAAACAACAGATGCCTCTAAAAGCTTCGCGGTTTTGTGCACA
TGAATGTACTCCAATTCACTCAAACTC
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