CN184830

Overview
NameCN184830
Unique NameCN184830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig155 contig Csv1_Contig155:469..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHRP_ARATH (Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.934e-15
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   10 AKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEAFEL 258
            A K  E+ RL GIYK +LS A VKL EG GK++ P+ V+V   DG    Y+ ++ILIA G R     IPG+E AI SD A +L
Sbjct:  179 ANKNAELQRLTGIYKNILSKANVKLIEGRGKVIDPHTVDV---DGK--IYTTRNILIAVGGRPFIPDIPGKEFAIDSDAALDL 256          

HSP 2 Score: 31.9574 bits (71), Expect = 1.934e-15
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  251 LSLEELPKRAVVLGGGYIAVEFA 319
            L L   PK+  ++GGGYIA+EFA
Sbjct:  254 LDLPSKPKKIAIVGGGYIALEFA 276          
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHR_DICDI (Glutathione reductase OS=Dictyostelium discoideum GN=gsr PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 3.464e-14
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    4 TSAKKTDE-ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEAFEL 258
            T  K  DE I RLNGIY   L+   +    G G+  GP E++V   +G K  Y+A HILIA G R     +PG+EL ITSD  FEL
Sbjct:   92 TIKKARDEYIKRLNGIYDSNLAKDNIVRINGYGRFSGPKEIQVNGANGEK--YTADHILIAAGGRPTVPDVPGKELGITSDGFFEL 175          

HSP 2 Score: 32.3426 bits (72), Expect = 3.464e-14
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  257 LEELPKRAVVLGGGYIAVEFA 319
            LE+LPK  +V+G GYIAVE A
Sbjct:  175 LEDLPKSTLVVGAGYIAVELA 195          
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHR_NEUCR (Glutathione reductase OS=Neurospora crassa GN=glr-1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.664e-13
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   13 KKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEAFEL 258
            K+   + RLNGIY+R L+N  V+   G  K++ PN VEVT  DGTK   +AK ILIA G      P IPG E    SD  F++
Sbjct:   91 KRDAYVARLNGIYERNLANDKVEYVHGWAKLLSPNSVEVTLDDGTKSVVNAKKILIAVGGNPTIPPHIPGSEYGTNSDGFFDI 173          

HSP 2 Score: 31.187 bits (69), Expect = 1.664e-13
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  257 LEELPKRAVVLGGGYIAVEFA 319
            ++ LPK+  ++G GYIAVEFA
Sbjct:  173 IDTLPKKVALVGAGYIAVEFA 193          
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.649e-13
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   28 ILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEAFEL 258
            I R++  Y  +L+   + +  G GK V  + +EVT  DGTK   +A HILIATG R  R  I GQE  I SD  F L
Sbjct:   92 ISRIHTSYNNVLAKNNIDVINGFGKFVDAHTIEVTLADGTKEQVTADHILIATGGRPYRPNIKGQEYGIDSDGFFAL 168          

HSP 2 Score: 34.2686 bits (77), Expect = 3.649e-13
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  254 SLEELPKRAVVLGGGYIAVEFA 319
            +L ELPKRA V+G GYIAVE +
Sbjct:  167 ALTELPKRAAVIGAGYIAVELS 188          
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHR_ASHGO (Glutathione reductase OS=Ashbya gossypii GN=GLR1 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.970e-12
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    7 SAKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPIPGQELAITSDEAFEL 258
            + K+   + RLNGIY+R L+  GV+   G  +     +VEVT+ D T   Y+A HILIATG        IPG E  + SD  F L
Sbjct:  107 AGKRNAYVERLNGIYERNLAKEGVEYVHGWARFNSEGQVEVTRPDQTTEKYTADHILIATGGEPVLPEGIPGAEYGVDSDGFFRL 191          

HSP 2 Score: 32.7278 bits (73), Expect = 4.970e-12
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  257 LEELPKRAVVLGGGYIAVEFA 319
            LEE PK+ V+ G GYIA EFA
Sbjct:  191 LEEQPKKVVISGSGYIATEFA 211          
BLAST of CN184830 vs. ExPASy Swiss-Prot
Match: GSHR_KLULA (Glutathione reductase OS=Kluyveromyces lactis GN=GLR1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.833e-11
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   13 KKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPIPGQELAITSDEAFEL 258
            K+   I RLNGIY+R L+  GV    G        +V+V + D    +Y+A HIL+ATG +    A IPG +  ++SDE FEL
Sbjct:  110 KRDAYIHRLNGIYERNLTKEGVDYVYGWASFTVDGKVQVKKADNCTETYTADHILVATGGKPIYPAKIPGYDYGVSSDEFFEL 192          

HSP 2 Score: 30.8018 bits (68), Expect = 1.833e-11
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  257 LEELPKRAVVLGGGYIAVEFA 319
            LE+ PK+ VV+G GYI VE A
Sbjct:  192 LEDQPKKVVVVGAGYIGVEIA 212          
The following BLAST results are available for this feature:
BLAST of CN184830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSHRP_ARATH1.934e-1549.40Glutathione reductase, chloroplastic OS=Arabidopsi... [more]
GSHR_DICDI3.464e-1446.51Glutathione reductase OS=Dictyostelium discoideum ... [more]
GSHR_NEUCR1.664e-1345.78Glutathione reductase OS=Neurospora crassa GN=glr-... [more]
GSHR_HAEIN3.649e-1344.16Glutathione reductase OS=Haemophilus influenzae GN... [more]
GSHR_ASHGO4.970e-1241.18Glutathione reductase OS=Ashbya gossypii GN=GLR1 P... [more]
GSHR_KLULA1.833e-1140.96Glutathione reductase OS=Kluyveromyces lactis GN=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184830 ID=CN184830; Name=CN184830; organism=Citrus sinensis; type=EST; length=322bp
AAAACTTCTGCAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTA
CAAGCGATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAA
AGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAG
TTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCA
ACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCAT
TTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTA
CATTGCTGTTGAGTTTGCTTCC
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