DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 78/121 (64.46%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN+  +++ GSNGHFELNVFKP+I   +L S+RL+ DAS SF K+CV GI+A+ +RI +LLHESLMLVT+LNP IGYD AA  AKKAHKE TTLK+A L LG   SEEFD  V P KMIG
Sbjct:  362 MGNNTTVSIAGSNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADEKRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFDKWVDPSKMIG 482          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_CAEEL (Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 75/122 (61.48%), Postives = 94/122 (77.05%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN VA++VGGSNGHFELNVFKP+I   +L S RLL D++ SF  +CV GI AN++ I+K++ ESLMLVT+LNP IGYDNAA +AK AHK GTTL   A+KLG+L  E+F   V PE M+GP
Sbjct:  379 MGNQVAVSVGGSNGHFELNVFKPLIVRNVLQSTRLLADSAVSFTDHCVDGIVANKDNIAKIMRESLMLVTALNPHIGYDNAAKIAKTAHKNGTTLVQEAVKLGILTEEQFAQWVKPENMLGP 500          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 73/123 (59.35%), Postives = 101/123 (82.11%), Query Frame = -3
Query:  325 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 693
            I N VA+ +GG++G+FELNVFKP+I   +L+S+RLL D+  SFE++C RGI  N+E++++ L+ SLMLVT+LNP IGYDNAA +AK AHK+GTTLK++ ++LG+L SE+FD  V+PEKMI PS
Sbjct:  340 IANDVAVNIGGASGNFELNVFKPLIIHNVLNSIRLLSDSCVSFEEHCARGIIPNKEKLNEHLNNSLMLVTALNPHIGYDNAAKIAKNAHKKGTTLKESGIELGLLTSEQFDQWVLPEKMIHPS 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 73/123 (59.35%), Postives = 101/123 (82.11%), Query Frame = -3
Query:  325 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 693
            I N VA+ +GG++G+FELNVFKP+I   +L+S+RLL D+  SFE++C RGI  N+E++++ L+ SLMLVT+LNP IGYDNAA +AK AHK+GTTLK++ ++LG+L SE+FD  V+PEKMI PS
Sbjct:  340 IANDVAVNIGGASGNFELNVFKPLIIHNVLNSIRLLSDSCVSFEEHCARGIIPNKEKLNEHLNNSLMLVTALNPHIGYDNAAKIAKNAHKKGTTLKESGIELGLLTSEQFDQWVLPEKMIHPS 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.747e-37
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GNHV +T+ GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N  RI+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+ EEFD +VVPEKMIG
Sbjct:  341 MGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEEEFDKIVVPEKMIG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_YEAST (Fumarate hydratase, mitochondrial OS=Saccharomyces cerevisiae GN=FUM1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.812e-37
Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN+ AIT  GS G FELNVFKP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+GP
Sbjct:  366 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 72/120 (60.00%), Postives = 94/120 (78.33%), Query Frame = -3
Query:  331 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 690
            GN VA+ +GG++G+FELNVF+PMIA   LHS RLL D   SF  +C  GI+ NRERI++L+  SLMLVT+LNP IGYD +A +AKKAHKEGT+L++AAL LG + +E+FD  V PE+M+G
Sbjct:  341 GNDVAVNIGGASGNFELNVFRPMIAYNFLHSARLLADGMRSFNDHCAVGIEPNRERIAELVQRSLMLVTALNPHIGYDKSAQIAKKAHKEGTSLREAALALGYVTAEQFDAWVRPEQMVG 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_SHIFL (Fumarate hydratase class II OS=Shigella flexneri GN=fumC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+PM+    L S+RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AAL LG L+  EFD+ V PE+M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_ECOLI (Fumarate hydratase class II OS=Escherichia coli (strain K12) GN=fumC PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+PM+    L S+RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AAL LG L+  EFD+ V PE+M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_ECO57 (Fumarate hydratase class II OS=Escherichia coli O157:H7 GN=fumC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+PM+    L S+RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AAL LG L+  EFD+ V PE+M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVG 461          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMH_DICDI2.097e-3864.46Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]
FUMH_CAEEL6.103e-3861.48Probable fumarate hydratase, mitochondrial OS=Caen... [more]
FUMC_LEPIN7.970e-3859.35Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC7.970e-3859.35Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_RICFE6.747e-3761.16Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMH_YEAST8.812e-3762.30Fumarate hydratase, mitochondrial OS=Saccharomyces... [more]
FUMC_RALSO3.349e-3660.00Fumarate hydratase class II OS=Ralstonia solanacea... [more]
FUMC_SHIFL4.373e-3661.98Fumarate hydratase class II OS=Shigella flexneri G... [more]
FUMC_ECOLI4.373e-3661.98Fumarate hydratase class II OS=Escherichia coli (s... [more]
FUMC_ECO574.373e-3661.98Fumarate hydratase class II OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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