DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_METEA (Fumarate hydratase class II OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=fumC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = -3
Query:  325 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 693
            +GN   ++  GS GHFELNVFKP+IA+ +L S+R+L DAS SF  NCV GI+AN +RIS L+  SLMLVT+L P IGYD AA +AK AHK GTTLK+ AL+LG +  EEF+ +V PE M+ PS
Sbjct:  348 VGNGTTVSFAGSQGHFELNVFKPVIANAVLQSVRILADASVSFTDNCVVGIKANTDRISDLMSRSLMLVTALAPSIGYDKAAEIAKTAHKNGTTLKEEALRLGYVTDEEFERVVRPETMLAPS 470          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+PM+    L S+RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AAL LG L+  EFD  V PE+M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDRWVRPEQMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PHOLL (Fumarate hydratase class II OS=Photorhabdus luminescens subsp. laumondii GN=fumC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+PM+ +  L S+RLL D   SF ++C  GI+ NR+RI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+KLG L   EFD  V PE M+G
Sbjct:  341 MGNDVAINIGGASGNFELNVFRPMVINNFLQSVRLLADGMRSFNEHCAVGIEPNRDRITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKQSAMKLGYLTEAEFDEWVRPEDMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RICBR (Fumarate hydratase class II OS=Rickettsia bellii (strain RML369-C) GN=fumC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  325 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 693
            +GNHV +T+ GSNGH ELNVFKP+I   +L S+ LL DA+ SF  +CV GI+ N   I+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+ EEF+ +VVPEKM+  S
Sbjct:  341 MGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDAANSFVTHCVDGIEPNITHINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEEEFNKIVVPEKMVRQS 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GNHV +T+ GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N  RI+ L  +SLMLVT LNP IGYDNAA +AK+AHK G TLK+AA KL  L+ EEFD +VVPEKMI
Sbjct:  341 MGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RICTY (Fumarate hydratase class II OS=Rickettsia typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GNHV +T+ GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N ERI+ L  +SLMLVT LNP IGYDNAA +AK+A+K G TLK+AA KL  L+ EEFD +V+PEKMI
Sbjct:  341 MGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIERINALRDKSLMLVTVLNPHIGYDNAAKIAKEAYKYGITLKEAAKKLNFLSEEEFDKIVIPEKMI 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RICCN (Fumarate hydratase class II OS=Rickettsia conorii GN=fumC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  325 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 693
            +GNHV +T+ GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N  RI+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+  +FD +VVPEKM+  S
Sbjct:  341 MGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEAKFDKIVVPEKMVSQS 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNV++PM+    L ++RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+ EEFD  V PE M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMESFNKHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDEEFDAWVRPELMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN  AI +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ NRE+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  340 MGNDTAIGIAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGP 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 70/122 (57.38%), Postives = 92/122 (75.41%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN  AI +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ N+E+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  340 MGNDTAIGIAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNKEKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDQFVVPEKMIGP 461          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_METEA5.712e-3659.35Fumarate hydratase class II OS=Methylobacterium ex... [more]
FUMC_ECOL65.712e-3661.98Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_PHOLL1.272e-3559.50Fumarate hydratase class II OS=Photorhabdus lumine... [more]
FUMC_RICBR1.662e-3559.35Fumarate hydratase class II OS=Rickettsia bellii (... [more]
FUMC_RICPR2.171e-3560.83Fumarate hydratase class II OS=Rickettsia prowazek... [more]
FUMC_RICTY2.835e-3560.00Fumarate hydratase class II OS=Rickettsia typhi GN... [more]
FUMC_RICCN2.835e-3557.72Fumarate hydratase class II OS=Rickettsia conorii ... [more]
FUMC_SALTY6.315e-3559.50Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_HELPY6.315e-3558.20Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_HELPJ1.407e-3457.38Fumarate hydratase class II OS=Helicobacter pylori... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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