DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNV++PM+    L ++RLL D  ASF ++C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+  EFD  V PE M+G
Sbjct:  341 MGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMASFNQHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDAEFDAWVRPELMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_YERPE (Fumarate hydratase class II OS=Yersinia pestis GN=fumC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.093e-34
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VAI +GG++G+FELNVF+P++    L S+RLL D    F ++C  GI+ NR+RI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AA+ LG L   EFD  V PE M+G
Sbjct:  341 MGNDVAINIGGASGNFELNVFRPLVIHNFLQSVRLLADGMRGFNEHCALGIEPNRDRITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAAMALGYLTDAEFDEWVRPEDMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_MYXXD (Fumarate hydratase class II OS=Myxococcus xanthus (strain DK 1622) GN=fumC PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.093e-34
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN VA+TVGG++G+F+LNVFKP+IA  LL S RLL D   SF  +C  GI+ NR RI + L  SLMLVT+LNP IGYDNAA +AK AH++GTTLK+ A+ LG++  E+FD  V PE M G
Sbjct:  343 MGNDVAVTVGGASGNFQLNVFKPLIAHNLLQSCRLLADGMRSFRLHCAVGIEPNRPRIQENLERSLMLVTALNPHIGYDNAAKIAKTAHRDGTTLKETAVALGLVTPEQFDQWVRPEDMTG 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BRUSU (Fumarate hydratase class II OS=Brucella suis GN=fumC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GN  A+TV  S GHFELNVFKP+IA  +L S+RLL D   SF  +CV GI+ N  RI +LL  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++ E++D LV  E+MI P
Sbjct:  342 GNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAP 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BRUME (Fumarate hydratase class II OS=Brucella melitensis GN=fumC PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GN  A+TV  S GHFELNVFKP+IA  +L S+RLL D   SF  +CV GI+ N  RI +LL  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++ E++D LV  E+MI P
Sbjct:  342 GNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAP 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = -3
Query:  325 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 690
            GNH A+T  GS GHFELNV+ P++A   L S++LL DA+ SF  NCV GI+A  + I   L  SLMLVT+L PKIGYDNAA +AK AHK GTTL++ A+  G +  EEFD +V PE MIGP+
Sbjct:  342 GNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN VAI VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  340 MGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN VAI VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  340 MGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.465e-33
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN VAI VGG++G+FELNVFKP++    L S+RLL D   SF+K+C  GI+ NRERI++L+  SLMLVT+LNP IGYD AA +AKKAHKE  +LK+AAL LG L   +F   VVP  M
Sbjct:  340 MGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDM 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHRVO (Fumarate hydratase class II OS=Chromobacterium violaceum GN=fumC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.720e-33
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GN  A+ +G ++G+FELNVFKP+IA   L S RLL D   S  ++CV G++ANR RI++L+  SLMLVT+LNP IGYD AAA+AK AH+ GTTL++AAL LG L++E+FD  V PE M+
Sbjct:  342 LGNDAALAIGAASGNFELNVFKPLIAHNFLQSARLLADGMDSLREHCVDGMEANRARIAELMARSLMLVTALNPHIGYDKAAAIAKHAHRHGTTLREAALALGHLSAEQFDAWVRPEDMV 461          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_SALTI2.400e-3458.68Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_YERPE4.093e-3457.85Fumarate hydratase class II OS=Yersinia pestis GN=... [more]
FUMC_MYXXD4.093e-3458.68Fumarate hydratase class II OS=Myxococcus xanthus ... [more]
FUMC_BRUSU1.556e-3357.85Fumarate hydratase class II OS=Brucella suis GN=fu... [more]
FUMC_BRUME1.556e-3357.85Fumarate hydratase class II OS=Brucella melitensis... [more]
FUMC_RHIME2.032e-3357.38Fumarate hydratase class II OS=Rhizobium meliloti ... [more]
FUMC_BORPE3.465e-3358.82Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC_BORPA3.465e-3358.82Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR3.465e-3358.82Fumarate hydratase class II OS=Bordetella bronchis... [more]
FUMC_CHRVO7.720e-3356.67Fumarate hydratase class II OS=Chromobacterium vio... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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