DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            IGN   IT+ GS G+FELNV+KP++A  L+ S+ LL DA  SF  +C  GI+ N+E+I+  L+ SLMLVT+LN  IGYD A+ +AKKA+KEGTTLK+AAL+LG L + EFD  V P+KM+
Sbjct:  338 IGNDTTITIAGSQGNFELNVYKPVMAYNLIQSIYLLSDACRSFNDHCAVGIKPNQEKINDYLNNSLMLVTALNQIIGYDKASEIAKKAYKEGTTLKEAALQLGYLTASEFDKAVDPKKMV 457          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BACCR (Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fumC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = -3
Query:  322 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 693
            +GN   I    S G+FELNVFKP+IA   L S  LL DA  SF  NC  GI+A+ E I++ ++ SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AAL+ G+L  E+FD +V P+KMI P +
Sbjct:  339 MGNDATIGFAASQGNFELNVFKPVIAYNFLQSAHLLADAIVSFNDNCAVGIEADEEVINENVNRSLMLVTALNPHIGYENAAKIAKHAHKEGLTLKEAALQSGLLTEEQFDEIVDPKKMIAPKE 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 68/121 (56.20%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GN+ A++  GS GHFELNV+ PM+A   L S++LLGDA+ SF  NCV GI+A  + I K +  SLMLVT+LN K+GYD  A +AK AHK GTTL++ A+  G L +EEFD  V PE MIGP
Sbjct:  342 GNNAALSFAGSQGHFELNVYNPMMAYNFLQSVQLLGDAAVSFTDNCVVGIEAREDNIRKGVENSLMLVTALNGKLGYDICAKIAKTAHKNGTTLREEAVGGGYLTNEEFDQYVRPENMIGP 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN   I+  G+ GHF+LNVFKP++A+  L S +LL DA  SF+++C  GI+ N  RI K L +SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V PE M+G
Sbjct:  341 LGNDTTISFAGTQGHFQLNVFKPVMAANFLQSAQLLADACVSFDEHCAVGIEPNFPRIKKQLDDSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDEWVRPEDMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = -3
Query:  322 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 693
            +GN   I    S G+FELNVFKP+IA   L S  LL DA  SF  NC  GI+A+ E I + ++ SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AAL+ G+L  E+F+ +V P+KMI P +
Sbjct:  339 MGNDATIGFAASQGNFELNVFKPVIAYNFLQSAHLLADAIVSFNDNCAVGIEADEEIIKENVNRSLMLVTALNPHIGYENAAKIAKHAHKEGLTLKEAALQSGLLTEEQFNEIVDPKKMIAPKE 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            IGN  AI +GG +G+F+LNVF+PMI    L S+R+L D   SF K CV GI+ N +RI K L ESLMLVTSL P IGYD +A +AK AH E  TLK+A LKL  ++  +FD LV PE MIG
Sbjct:  341 IGNDSAIGIGGLSGNFQLNVFRPMIIYNFLQSVRILSDGIKSFNKKCVIGIKPNIKRIKKFLKESLMLVTSLTPHIGYDKSAKIAKLAHNENITLKEACLKLNYISESQFDILVRPENMIG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN  A+ + GS G+FELNV+KP+I   +L S+ LL DA+ SF  +C+ G++ NR++I   +  SLMLVT+LNP IGYD AAAVAKKA+ EG TLK+AA++LG L +EEFD  V  E M+G
Sbjct:  342 MGNDAAVGIAGSQGNFELNVYKPLIIYNVLQSIALLSDAAQSFTDHCLVGVEPNRQQIQAYVERSLMLVTALNPHIGYDKAAAVAKKAYSEGKTLKEAAVELGYLTAEEFDRWVRLELMLG 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_RHILO (Fumarate hydratase class II OS=Rhizobium loti GN=fumC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GN+ A+T  GS GHFELNV+ P++A   L S++LL DAS SF  NCV GI+A  + I   L  SLMLVT+L P IGYDNAA +AK AHK GTTL++ AL  G+++  ++D LV PE M  P
Sbjct:  344 GNNAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLSDASVSFTDNCVVGIEAREDNIKAALDRSLMLVTALAPTIGYDNAAKIAKTAHKNGTTLREEALATGLVSEVDYDRLVRPEDMTHP 464          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN   I+  GS GHF+LNVFKP++A+  L S +LL D   SF+++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V P+ M+G
Sbjct:  341 LGNDTTISFAGSQGHFQLNVFKPVMAANFLQSAQLLADVCISFDEHCASGIEPNYPRIQQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDQWVRPQNMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN VAI    S G+FELNVFKP+I    L SL LL D+  SF  +C  GI+ NR +I   LH SLMLVT+LNP IGY+NAA VAK AHK+G +LK++ ++LG+++ E+F+  V P KMIGP
Sbjct:  340 MGNDVAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEPNRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESTMELGLVSEEDFNKFVDPTKMIGP 461          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_COXBU3.831e-3256.67Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_BACCR5.004e-3255.65Fumarate hydratase class II OS=Bacillus cereus (st... [more]
FUMC_AGRT56.535e-3256.20Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_PASMU1.115e-3153.72Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_BACAN2.483e-3154.84Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_WIGBR4.236e-3157.02Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_THEEB5.532e-3154.55Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_RHILO5.532e-3154.55Fumarate hydratase class II OS=Rhizobium loti GN=f... [more]
FUMC_HAEDU5.532e-3152.07Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_CAMJE7.226e-3154.92Fumarate hydratase class II OS=Campylobacter jejun... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
back to top