DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GN V I + G++G+FELNV+ P+IA  LL S+RLLGDA  SF ++C  GI+   E+I   LH SLMLVT+LN KIGY+NAA VAK A+K   +L++ A++LG+L  EEFD LVVP  M+ P
Sbjct:  341 GNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEPVPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFDELVVPADMVHP 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CAUCR (Fumarate hydratase class II OS=Caulobacter crescentus GN=fumC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GNH  +T  GS GHFELNVF P++A   L S+RL+ DA+ SF  NCV GI+   + I K +  SLMLVT+LN K+GYD  A +AK AHK GTTL++ A+  G L +EEF+  V PEKMI P
Sbjct:  342 GNHSTLTFAGSQGHFELNVFNPVMAYNFLQSVRLVADAAISFTDNCVVGIEPRVDNIKKGVENSLMLVTALNGKLGYDACAKIAKTAHKNGTTLREEAVGGGYLTNEEFEQYVRPEKMISP 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN VAI +GG+ G+FELN  KP+I    L S RLL D + SF  +C  GI AN  RI + L ESLMLVT+LNP IGYD AA +AKKAH E  TLK+AA++LG + +E+FD  V P+KM
Sbjct:  341 MGNDVAINLGGAMGNFELNTMKPLIIHNFLQSTRLLADGAESFNTHCAAGITANTVRIKQHLQESLMLVTALNPHIGYDKAAEIAKKAHHEMLTLKEAAIRLGYVTAEQFDVWVDPQKM 459          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_SYNY3 (Fumarate hydratase class II OS=Synechocystis sp. (strain PCC 6803) GN=fumC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   I    S G+FELNVFKP+I    LHSL LL DA ASF ++ V G+Q N  ++   L  SLMLVT+LNP IGYDNAA VAK A  +G TLK AA+ LG+L   +FD  VVPE+MI P
Sbjct:  342 MGNDATIGFAASQGNFELNVFKPVIIHNFLHSLHLLSDACASFRQHLVVGLQVNESKVKDFLDTSLMLVTALNPHIGYDNAALVAKTAFAQGITLKQAAVDLGLLTPAQFDAWVVPEQMIAP 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  331 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 690
            GN   I   GS GHF+LNVF P++ +  L S +LLGDA  SF+++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTL++ A+ LG++++E+FD  V PE M+G
Sbjct:  342 GNDTTIAFVGSQGHFQLNVFNPVMIANFLQSAQLLGDACVSFDEHCAVGIEPNYPRIKQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLREEAINLGLVSAEDFDKWVRPEDMVG 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IGN   I    S G+FELNVFKP+I    L S  LL D   +F   C+ G++AN   I K L+ESLMLVT+LNP IGY+NAA +AKKAH EG TLK+AA++ G+L  EEF+ +V P KM+ P
Sbjct:  339 IGNDATIAFAASQGNFELNVFKPVIIYNFLQSTTLLTDGLRTFHDKCLIGLEANETIIKKHLNESLMLVTALNPHIGYENAAKIAKKAHAEGLTLKEAAMQSGLLTEEEFEKMVDPAKMVHP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BACSU (Fumarate hydratase class II OS=Bacillus subtilis GN=fumC PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   I    S G+FELNVFKP+I    L S++LL D   SF   C  GI+ N+E I + L  SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AALKL +L  E+F+ +V PE M+ P
Sbjct:  339 MGNDATIGFAASQGNFELNVFKPVIIYNFLQSVQLLSDGMNSFHDKCAVGIEPNKETIQENLSNSLMLVTALNPHIGYENAAKIAKLAHKEGLTLKEAALKLELLTEEQFNEMVKPEDMVKP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_SCHPO (Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe GN=fum1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GNH  ITV G++GH ELNVFKP++A  +L S+RLLGDA  SF  +CV GI+ N E I++ L +SLMLVT+LNP IGYDN A +AK A K  +TLK   + LG    E+FD  V PE MI
Sbjct:  396 MGNHATITVAGASGHCELNVFKPLLAKNILSSIRLLGDACESFTDHCVVGIEPNYEGIARHLRDSLMLVTALNPHIGYDNCAKIAKTALKNKSTLKHEFVTLGFGTPEQFDEWVRPELMI 515          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN  AI    S G+FELNVFKP+IA   L S +LL D+  SF++ C  GI+ N E+I K L++SLMLVT+LNP IGY+NAA +AKKA  + +TLK+ A++LG+L  E+FD  V PE+M  P
Sbjct:  339 MGNDAAIGFAASQGNFELNVFKPVIAYNFLQSSQLLADSIISFDERCAVGIEPNHEQIEKNLNDSLMLVTALNPHIGYENAAKIAKKAFADNSTLKETAVELGLLTEEQFDEYVNPEEMTYP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GN   I+   S GH +LNVFKP+I   LL S+RLL D   +F K+CV G++ + +R++ LL   LMLVT+LNP IGYD AA +AKKA+ EGTTL+ AAL+LG L+  +FD  V PE+M+
Sbjct:  339 MGNDSTISFAASQGHLQLNVFKPVIVYNLLESIRLLADGCRNFNKHCVAGLEPDAQRMADLLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLRAAALQLGYLDEAQFDEWVRPEQML 458          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_NEIMA9.437e-3155.37Fumarate hydratase class II OS=Neisseria meningiti... [more]
FUMC_CAUCR2.102e-3054.55Fumarate hydratase class II OS=Caulobacter crescen... [more]
FUMC_NITEU2.746e-3056.30Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC_SYNY33.586e-3055.74Fumarate hydratase class II OS=Synechocystis sp. (... [more]
FUMC_HAEIN3.586e-3052.50Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC_BACHD6.117e-3054.10Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_BACSU7.989e-3054.10Fumarate hydratase class II OS=Bacillus subtilis G... [more]
FUMH_SCHPO1.043e-2955.83Fumarate hydratase, mitochondrial OS=Schizosacchar... [more]
FUMC_OCEIH1.043e-2953.28Fumarate hydratase class II OS=Oceanobacillus ihey... [more]
FUMC2_PSEAE1.363e-2952.50Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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