DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN  AI    S GH +LNVFKP+I   LL S+ LL D   +F+++CV GI+ + E+++  L   LMLVT+LNP IGYD AA +AKKA+ EGTTL++AAL L  L +E+FD  V PE M+ P
Sbjct:  339 LGNDAAIGFAASQGHLQLNVFKPVIIHNLLQSIELLADGCRNFQQHCVAGIEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYSEGTTLREAALALKYLTNEQFDQWVRPENMLAP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAES (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fumC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   + +  S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  339 MGNDTTVGIASSQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAEQ (Fumarate hydratase class II OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fumC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   + +  S G+FELNVFKP+I    L S+ LL D   +F KNC  GIQ   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +   +F+  + PE M+ P
Sbjct:  339 MGNDTTVGIASSQGNFELNVFKPVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PSESM (Fumarate hydratase class II OS=Pseudomonas syringae pv. tomato GN=fumC-1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +GN V I    S GH +LNV+KP+I   +L S+RLL D  ++F ++CV G++ + E++++ L   LMLVT+LNP IGYD +A +AKKA+ EG TL++AAL LG L  EEFD  V P+KM+
Sbjct:  339 MGNDVTIGFAASQGHLQLNVYKPVIIHNVLQSIRLLADGCSNFNEHCVAGMEPDAEKMAEHLERGLMLVTALNPHIGYDKSAHIAKKAYTEGLTLREAALALGYLTDEEFDAWVRPDKML 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAHJ (Fumarate hydratase class II OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fumC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   + +  S G+FELNVFKP+I    L S+ LL D   +F  NC  GI+   E I+  L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTTVGIASSQGNFELNVFKPVILHNTLQSIYLLADGMQTFNDNCAVGIEPIEENINNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQSGHVTEEQFEEWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  346 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 690
            GN   +   GS G+F+LNVFKP++   +L S+RL+ DA  +F  +C  GIQ N  +I + L ++LM VT+LN  IGYD AAA+AKKAHKEGT+LKDAAL LG +  +EF   VVP
Sbjct:  344 GNDATVAFAGSQGNFQLNVFKPVMVHAVLESIRLISDACLAFNDHCAVGIQPNEAKIKENLDKNLMQVTALNRHIGYDKAAAIAKKAHKEGTSLKDAALALGYVTEDEFAQWVVP 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_THEAQ (Fumarate hydratase class II OS=Thermus aquaticus GN=fumC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = -3
Query:  322 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 690
            GN  A+   GS G+F+LNV+KP++    L S++LLGDA ASF+++  +GI+ N ERI + L+++ ML T+LN  IGYD AA + KKA KE  +LK AAL+LG L  EEFD +VVP ++  P +
Sbjct:  342 GNDQAVAFAGSQGNFQLNVYKPVMVDAALESIKLLGDAVASFDQHLAQGIEPNLERIEEHLNKNPMLATALNKAIGYDKAAEIVKKAIKEKKSLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAS1 (Fumarate hydratase class II OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=fumC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN  A+ +  S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA++AKKAH+EG TLK++A+  G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTAVGIASSQGNFELNVYKPVILLNTLQSIYLLADGMDTFNNNCAVGIEPIPENIDNYLNQSLMLVTALNPHIGYEKAASIAKKAHREGLTLKESAIDSGYVTEEQFEQWIKPEDMVEP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAW (Fumarate hydratase class II OS=Staphylococcus aureus (strain MW2) GN=fumC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAS (Fumarate hydratase class II OS=Staphylococcus aureus (strain MSSA476) GN=fumC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_PSEPK2.324e-2951.64Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_STAES1.154e-2849.18Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_STAEQ1.154e-2849.18Fumarate hydratase class II OS=Staphylococcus epid... [more]
FUMC_PSESM3.356e-2850.00Fumarate hydratase class II OS=Pseudomonas syringa... [more]
FUMC_STAHJ4.384e-2848.36Fumarate hydratase class II OS=Staphylococcus haem... [more]
FUMC_DEIRA4.384e-2853.04Fumarate hydratase class II OS=Deinococcus radiodu... [more]
FUMC_THEAQ9.766e-2849.59Fumarate hydratase class II OS=Thermus aquaticus G... [more]
FUMC_STAS11.666e-2747.54Fumarate hydratase class II OS=Staphylococcus sapr... [more]
FUMC_STAAW2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAS2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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