DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAR (Fumarate hydratase class II OS=Staphylococcus aureus (strain MRSA252) GN=fumC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAN (Fumarate hydratase class II OS=Staphylococcus aureus (strain N315) GN=fumC PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAM (Fumarate hydratase class II OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fumC PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_STAAC (Fumarate hydratase class II OS=Staphylococcus aureus (strain COL) GN=fumC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN   +    S G+FELNV+KP+I    L S+ LL D   +F  NC  GI+   E I   L++SLMLVT+LNP IGY+ AA +AKKAHKEG TLK++A++ G +  E+F+  + PE M+ P
Sbjct:  339 MGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDP 460          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_THET2 (Fumarate hydratase class II OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fumC PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = -3
Query:  322 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 690
            GN   +   GS G+F+LNV+KP++A   L S+ LL DA ASF+ +  +GI+ N ERI + L ++ ML T+LN  IGYD AA + KKA KE  TLK AAL+LG L  EEFD +VVP ++  P +
Sbjct:  342 GNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEHLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_METAC (Fumarate hydratase class II OS=Methanosarcina acetivorans GN=fumC PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            IG   A+   GS G+FELN   P+I + +LHS R LGDA   F +  + GI  +R RI K +  SLMLVT+L+P IGYD A+A+ ++A  E TTL++AA+K G +++E+FD +V P+KM+G
Sbjct:  353 IGEDNAVAFAGSQGNFELNAMCPIIINNVLHSARTLGDACVKFREYGINGIMLDRSRIDKFVGTSLMLVTALSPVIGYDKASAIVQRALDENTTLREAAVKGGFISAEDFDRIVDPKKMVG 473          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LISMO (Fumarate hydratase class II OS=Listeria monocytogenes GN=fumC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN V I V  S G+FELNV+KP+I    L S++LL D+  SF  +C+ G+ AN + I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  +EFD  + P KM
Sbjct:  334 MGNDVTINVAASQGNFELNVYKPVIIFNFLESIKLLADSMRSFRVHCLEGLTANEKVIETKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWINPLKM 452          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_SYNPX (Fumarate hydratase class II OS=Synechococcus sp. (strain WH8102) GN=fumC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 53/122 (43.44%), Postives = 81/122 (66.39%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            IG   A+   G+ GH ++NV+KP+I   L+  +RLL DA   F  N + G++A+R+RI+  +  SLMLVT+L P+IGY+ A A+A+ AH++G TL++AA++ G +  E FD L+ P  M  P
Sbjct:  342 IGMDAAVAAAGAGGHLQMNVYKPLIGYNLIEGIRLLQDACRCFRLNLLTGMEADRDRIAFYVERSLMLVTALTPEIGYEKACAIAQHAHRDGLTLREAAMQSGAITDERFDQLIDPAAMASP 463          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LISMF (Fumarate hydratase class II OS=Listeria monocytogenes serotype 4b (strain F2365) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN V I V  S G+FELNV+KP+I    L S++LL D+  SF  +C+ G+ AN + I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  ++FD  + P KM
Sbjct:  334 MGNDVTINVAASQGNFELNVYKPVIIFNFLESVKLLSDSMRSFRLHCLEGLTANEKVIETKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKQFDLWIDPLKM 452          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PROMM (Fumarate hydratase class II OS=Prochlorococcus marinus (strain MIT 9313) GN=fumC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 57/119 (47.90%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            IG   A+T+ G +GH ++NV+KP+I   LLHS+ LL DA   +    V+GI+ NR +I   L +SLMLVT+L P+IGYD A+ +A  AH++G +L++AALKLG ++ E+FD +V P  M
Sbjct:  343 IGLDSAVTMAGGSGHLQMNVYKPLIGFNLLHSIELLHDACRKYRLAMVQGIEPNRIKIQHDLEQSLMLVTALAPEIGYDKASEIAHLAHEKGFSLREAALKLGYVSKEDFDRIVNPALM 461          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_STAAR2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAN2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAM2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_STAAC2.176e-2747.54Fumarate hydratase class II OS=Staphylococcus aure... [more]
FUMC_THET21.410e-2649.59Fumarate hydratase class II OS=Thermus thermophilu... [more]
FUMC_METAC3.142e-2647.93Fumarate hydratase class II OS=Methanosarcina acet... [more]
FUMC_LISMO4.103e-2649.58Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_SYNPX9.140e-2643.44Fumarate hydratase class II OS=Synechococcus sp. (... [more]
FUMC_LISMF1.194e-2548.74Fumarate hydratase class II OS=Listeria monocytoge... [more]
FUMC_PROMM1.559e-2547.90Fumarate hydratase class II OS=Prochlorococcus mar... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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