DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            +GN   I +  S G+FELNV+KP+I    L S+ LL D+  SF  +C+ G+ AN   I   +++SLMLVT+LNP IGY+ AA +AK A  E TTLK+AA+K G +  +EFD  + P KM
Sbjct:  334 MGNDTTINIAASQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKM 452          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            +GN+  + +GGS G+FELNV KP+I    L S+ LL +   +F +  V+G++ N+ R+   ++ SLMLVT+L P +GYD  +  A KA  E  +LK+A L LG L+ +EFD LVVPE M+G
Sbjct:  338 LGNNQTVIIGGSRGNFELNVMKPVIIYNFLQSVDLLSEGMRAFSEFFVKGLKVNKARLQDNINNSLMLVTALAPVLGYDKCSKAALKAFHESISLKEACLALGYLSEKEFDRLVVPENMVG 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            IGN+ A+ +GGS G+FELNV KP+I    L S+ +L     +F    V G++ N+ R+ + L  SLMLVT+L P +GYD  + +A KA  +   LK+A +++G L++EEFD LVVPE M+G
Sbjct:  338 IGNNQAVIMGGSRGNFELNVMKPVIIYNFLQSVDILAGGMQAFADYFVSGLRVNKPRLKEYLDNSLMLVTALTPVLGYDKCSKMALKAFHDNINLKEACIQMGYLSAEEFDRLVVPESMVG 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24
Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GN ++I++GGS+G  +LN ++P+I    L S+RLL D+  +F   C+ GI+   +RI KLL++SLMLVT+L+  IGYD +A +A+ A+  G TLK A+++ G +  ++FD+ V PE MI P
Sbjct:  325 MGNDLSISLGGSSGQLQLNTYRPLIIYNFLQSIRLLTDSIKNFHDYCIVGIRPKFKRIEKLLNKSLMLVTALSSHIGYDKSAQIAQTAYLNGITLKAASIQSGYVTEKQFDDWVCPENMIYP 446          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = -3
Query:  331 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 678
            A+T+ GS GH ++N +KP+IA  LL S+ LL  A  S     + GI+ N E+I   L  SLML+TSL P IGY+ A+ +A+ AH++  TLK+A   LG LN ++FD +V P+ M G
Sbjct:  347 AVTMAGSGGHLQMNSYKPLIAFNLLESIDLLSSACKSSRILMIEGIEPNLEKIQNSLQNSLMLITSLTPIIGYEKASKIAQCAHEKDITLKEATKLLGYLNEDDFDRIVNPQSMTG 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            + N VA+  GG+ G+ E+NV+KP+I   +  S+ +L D   +F    V G + NR++I + +  SLMLVT+L P IGYD A+ +A  A     TLK AALKLG +   EFD +V P KM+ P
Sbjct:  341 MANDVAVGFGGAGGYLEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGTEPNRKKIKEYVERSLMLVTALAPVIGYDKASRIAHYAMDNDLTLKSAALKLGFVTEPEFDRIVDPAKMVKP 462          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            IGN+ ++   G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ NR ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  VVP  M+G
Sbjct:  338 IGNNQSVIFSGTKGNFELNVMKPVIIYDFLQSVNLLSGAMRSFADYFVSGLKVNRGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEQEFDTHVVPGLMLG 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693
            IGN+ +I   G+ G+FELNV KP+I    L S+ LL  A  SF    V G++ N+ ++ + +  SLMLVT+L P +GYD  + +A KA  E  +LK+A + LG L+ +EFD  V+P  M+G
Sbjct:  338 IGNNQSIIFSGTKGNFELNVMKPVIIYDFLQSVNLLAGAMRSFADYFVCGLKVNKGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEKEFDEHVIPGLMVG 458          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = -3
Query:  334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693
            +G   A+++  ++G  ++N +KP+I   +L S++LL  A ++F    V GIQ N + I   L  SLMLVT+L PKIGY+ AA +A  A  E   LK+A +KLG L + EF++ +   KMI
Sbjct:  342 MGFEYAVSIANASGTLQMNEYKPLIGFNILTSIKLLNHAISNFRLKLVEGIQPNPKTIKANLENSLMLVTALVPKIGYEKAAEIANLAFNESINLKEATIKLGYLTANEFEDAINTNKMI 461          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693
            IGN  AI V G +G+FELNV  P++A  LLHS++LL + S       +   + N+ ++S+ L  + +LVT+LNP IGY  AA +AK+A++EG  + D AL+   L+    + L+ PEK+
Sbjct:  335 IGNDAAIAVAGQSGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQGKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_LISIN5.925e-2547.90Fumarate hydratase class II OS=Listeria innocua GN... [more]
FUMC_CHLPN1.011e-2445.45Fumarate hydratase class II OS=Chlamydia pneumonia... [more]
FUMC_CHLCV1.011e-2445.45Fumarate hydratase class II OS=Chlamydophila cavia... [more]
FUMC_BLOFL2.940e-2444.26Fumarate hydratase class II OS=Blochmannia florida... [more]
FUMC_PROMA9.459e-2345.69Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC2_BRAJA1.613e-2243.44Fumarate hydratase class II 2 OS=Bradyrhizobium ja... [more]
FUMC_CHLMU1.366e-2143.80Fumarate hydratase class II OS=Chlamydia muridarum... [more]
FUMC_CHLTR5.190e-2142.98Fumarate hydratase class II OS=Chlamydia trachomat... [more]
FUMC_PROMP1.278e-1940.83Fumarate hydratase class II OS=Prochlorococcus mar... [more]
FUMC1_PSEAE1.278e-1941.18Fumarate hydratase class II 1 OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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