DC887526
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_LISIN (Fumarate hydratase class II OS=Listeria innocua GN=fumC PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.925e-25 Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693 +GN I + S G+FELNV+KP+I L S+ LL D+ SF +C+ G+ AN I +++SLMLVT+LNP IGY+ AA +AK A E TTLK+AA+K G + +EFD + P KM Sbjct: 334 MGNDTTINIAASQGNFELNVYKPVIIFNFLESITLLSDSMRSFRIHCLEGLTANESVIEAKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKEFDLWIDPLKM 452
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLPN (Fumarate hydratase class II OS=Chlamydia pneumoniae GN=fumC PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24 Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = -3 Query: 331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693 +GN+ + +GGS G+FELNV KP+I L S+ LL + +F + V+G++ N+ R+ ++ SLMLVT+L P +GYD + A KA E +LK+A L LG L+ +EFD LVVPE M+G Sbjct: 338 LGNNQTVIIGGSRGNFELNVMKPVIIYNFLQSVDLLSEGMRAFSEFFVKGLKVNKARLQDNINNSLMLVTALAPVLGYDKCSKAALKAFHESISLKEACLALGYLSEKEFDRLVVPENMVG 458
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLCV (Fumarate hydratase class II OS=Chlamydophila caviae GN=fumC PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24 Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = -3 Query: 331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693 IGN+ A+ +GGS G+FELNV KP+I L S+ +L +F V G++ N+ R+ + L SLMLVT+L P +GYD + +A KA + LK+A +++G L++EEFD LVVPE M+G Sbjct: 338 IGNNQAVIMGGSRGNFELNVMKPVIIYNFLQSVDILAGGMQAFADYFVSGLRVNKPRLKEYLDNSLMLVTALTPVLGYDKCSKMALKAFHDNINLKEACIQMGYLSAEEFDRLVVPESMVG 458
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_BLOFL (Fumarate hydratase class II OS=Blochmannia floridanus GN=fumC PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.940e-24 Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = -3 Query: 328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693 +GN ++I++GGS+G +LN ++P+I L S+RLL D+ +F C+ GI+ +RI KLL++SLMLVT+L+ IGYD +A +A+ A+ G TLK A+++ G + ++FD+ V PE MI P Sbjct: 325 MGNDLSISLGGSSGQLQLNTYRPLIIYNFLQSIRLLTDSIKNFHDYCIVGIRPKFKRIEKLLNKSLMLVTALSSHIGYDKSAQIAQTAYLNGITLKAASIQSGYVTEKQFDDWVCPENMIYP 446
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PROMA (Fumarate hydratase class II OS=Prochlorococcus marinus GN=fumC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23 Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = -3 Query: 331 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 678 A+T+ GS GH ++N +KP+IA LL S+ LL A S + GI+ N E+I L SLML+TSL P IGY+ A+ +A+ AH++ TLK+A LG LN ++FD +V P+ M G Sbjct: 347 AVTMAGSGGHLQMNSYKPLIAFNLLESIDLLSSACKSSRILMIEGIEPNLEKIQNSLQNSLMLITSLTPIIGYEKASKIAQCAHEKDITLKEATKLLGYLNEDDFDRIVNPQSMTG 462
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC2_BRAJA (Fumarate hydratase class II 2 OS=Bradyrhizobium japonicum GN=fumC2 PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22 Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = -3 Query: 328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693 + N VA+ GG+ G+ E+NV+KP+I + S+ +L D +F V G + NR++I + + SLMLVT+L P IGYD A+ +A A TLK AALKLG + EFD +V P KM+ P Sbjct: 341 MANDVAVGFGGAGGYLEMNVYKPLIIHNIAQSVTILTDGCTNFRTFLVEGTEPNRKKIKEYVERSLMLVTALAPVIGYDKASRIAHYAMDNDLTLKSAALKLGFVTEPEFDRIVDPAKMVKP 462
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLMU (Fumarate hydratase class II OS=Chlamydia muridarum GN=fumC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21 Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = -3 Query: 331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693 IGN+ ++ G+ G+FELNV KP+I L S+ LL A SF V G++ NR ++ + + SLMLVT+L P +GYD + +A KA E +LK+A + LG L+ +EFD VVP M+G Sbjct: 338 IGNNQSVIFSGTKGNFELNVMKPVIIYDFLQSVNLLSGAMRSFADYFVSGLKVNRGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEQEFDTHVVPGLMLG 458
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_CHLTR (Fumarate hydratase class II OS=Chlamydia trachomatis GN=fumC PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21 Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -3 Query: 331 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 693 IGN+ +I G+ G+FELNV KP+I L S+ LL A SF V G++ N+ ++ + + SLMLVT+L P +GYD + +A KA E +LK+A + LG L+ +EFD V+P M+G Sbjct: 338 IGNNQSIIFSGTKGNFELNVMKPVIIYDFLQSVNLLAGAMRSFADYFVCGLKVNKGQLQQNVERSLMLVTALAPVLGYDKCSKIALKAFHENLSLKEACVSLGFLSEKEFDEHVIPGLMVG 458
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = -3 Query: 334 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 693 +G A+++ ++G ++N +KP+I +L S++LL A ++F V GIQ N + I L SLMLVT+L PKIGY+ AA +A A E LK+A +KLG L + EF++ + KMI Sbjct: 342 MGFEYAVSIANASGTLQMNEYKPLIGFNILTSIKLLNHAISNFRLKLVEGIQPNPKTIKANLENSLMLVTALVPKIGYEKAAEIANLAFNESINLKEATIKLGYLTANEFEDAINTNKMI 461
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC1_PSEAE (Fumarate hydratase class II 1 OS=Pseudomonas aeruginosa GN=fumC1 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19 Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = -3 Query: 337 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 693 IGN AI V G +G+FELNV P++A LLHS++LL + S + + N+ ++S+ L + +LVT+LNP IGY AA +AK+A++EG + D AL+ L+ + L+ PEK+ Sbjct: 335 IGNDAAIAVAGQSGNFELNVMLPLVADNLLHSIQLLANVSRLLADKAIASFKVNQGKLSEALARNPILVTALNPIIGYQKAAEIAKQAYREGRPIIDVALENTDLDRARLEVLLDPEKL 453 The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bpback to top |